Paket: mosdepth (0.3.6+ds-1 ve diğerleri)

mosdepth için bağlantılar

Debian Kaynakları:

mosdepth Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [github.com]

Benzer paketler:

BAM/CRAM depth calculation biological sequencing

Many small reads are produced by high-throughput "next generation" sequencing technologies. The final sequence is derived from how these reads are overlapping towards a consensus. The more reads are covering/confirming parts of a nucleotide seq, the higher the confidence is. Too many reads would be indicative of e.g. repeats in the genome.

mosdepth can output:

 *  per-base depth about 2x as fast samtools depth--about 25 minutes
    of CPU time for a 30X genome.
 *  mean per-window depth given a window size--as would be used for
    CNV calling.
 *  the mean per-region given a BED file of regions.
 *  a distribution of proportion of bases covered at or above a given
    threshold for each chromosome and genome-wide.
 *  quantized output that merges adjacent bases as long as they fall
    in the same coverage bins e.g. (10-20)
 *  threshold output to indicate how many bases in each region are
    covered at the given thresholds.

when appropriate, the output files are bgzipped and indexed for ease of use.

mosdepth ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: libc6 (>= 2.33) [sparc64]

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

dep: libc6 (>= 2.34) [sparc64 değil]
dep: libhts-dev [sparc64 değil]

development files for the HTSlib

mosdepth indir

Tüm mevcut mimariler için indir
Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	0.3.6+ds-1	166,4 kB	585,0 kB	[dosya listesi]
arm64	0.3.6+ds-1	160,2 kB	597,0 kB	[dosya listesi]
armel	0.3.6+ds-1	149,7 kB	537,0 kB	[dosya listesi]
armhf	0.3.6+ds-1	152,9 kB	417,0 kB	[dosya listesi]
i386	0.3.6+ds-1	180,4 kB	624,0 kB	[dosya listesi]
mips64el	0.3.6+ds-1	153,4 kB	652,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	0.3.6+ds-1	174,4 kB	726,0 kB	[dosya listesi]
ppc64el	0.3.6+ds-1	176,5 kB	725,0 kB	[dosya listesi]
riscv64	0.3.6+ds-1	167,7 kB	497,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	0.3.3+ds-1	134,0 kB	543,0 kB	[dosya listesi]