Paket: nanopolish (0.11.0-2)

[ Kaynak: nanopolish  ]

consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

nanopolish ile İlgili Diğer Paketler

• dep: libc6 (>= 2.27)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libgcc1 (>= 1:3.3.1)

  GCC support library

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libhdf5-103

  Hierarchical Data Format 5 (HDF5) - runtime files - serial version

• dep: libhts2 (>= 1.4.1)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• rec: python-biopython

  Python library for bioinformatics (implemented in Python 2)

• rec: python-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 2)

• sug: make

  utility for directing compilation

• sug: perl

  Larry Wall's Practical Extraction and Report Language

nanopolish indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	2.162,9 kB	9.781,0 kB	[dosya listesi]