Paket: mash (2.1+dfsg-2)

[ Kaynak: mash  ]

fast genome and metagenome distance estimation using MinHash

Mash uses MinHash locality-sensitive hashing to reduce large biosequences to a representative sketch and rapidly estimate pairwise distances between genomes or metagenomes. Mash sketch databases effectively delineate known species boundaries, allow construction of approximate phylogenies, and can be searched in seconds using assembled genomes or raw sequencing runs from Illumina, Pacific Biosciences, and Oxford Nanopore. For metagenomics, Mash scales to thousands of samples and can replicate Human Microbiome Project and Global Ocean Survey results in a fraction of the time.

mash ile İlgili Diğer Paketler

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libcapnp-0.7.0

  Cap'n Proto C++ library

• dep: libgcc1 (>= 1:3.0) [amd64, arm64]

  GCC support library

  dep: libgcc1 (>= 1:3.5) [armhf]

  dep: libgcc1 (>= 1:4.2) [i386]

• dep: libgsl23 (>= 2.5)

  GNU Scientific Library (GSL) -- library package

• dep: libgslcblas0 (>= 2.4)

  GNU Scientific Library (GSL) -- blas library package

• dep: libmurmurhash1 (>= 0.2) [armhf]

  Portable MurmurHash Implementation

  dep: libmurmurhash1 (>= 1.1) [armhf değil]

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

mash indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	145,3 kB	439,0 kB	[dosya listesi]
arm64	127,2 kB	379,0 kB	[dosya listesi]
armhf	124,1 kB	270,0 kB	[dosya listesi]
i386	154,4 kB	470,0 kB	[dosya listesi]