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[ Kaynak: seqtools  ]

Paket: belvu (4.44.1+dfsg-3)

belvu için bağlantılar

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seqtools Kaynak Paketini İndir:

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multiple sequence alignment viewer and phylogenetic tool

Belvu is a multiple sequence alignment viewer and phylogenetic tool with an extensive set of user-configurable modes to color residues.

 * View multiple sequence alignments.
 * Residues can be coloured by conservation, with user-configurable
   cutoffs and colours.
 * Residues can be coloured by residue type (user-configurable).
 * Colour schemes can be imported or exported.
 * Swissprot (or PIR) entries can be fetched by double clicking.
 * The position in the alignment can be easily tracked.
 * Manual deletion of rows and columns.
 * Automatic editing of rows and columns based on customisable criteria:
    - removal of all-gap columns;
    - removal of all gaps;
    - removal of redundant sequences;
    - removal of a column by a user-specified percentage of gaps;
    - filtering of sequences by percent identity;
    - removal of sequences by a user-specified percentage of gaps;
    - removal of partial sequences (those starting or ending with
      gaps); and
    - removal of columns by conservation (with user-specified
      upper/lower cutoffs).
 * The alignment can be saved in Stockholm, Selex, MSF or FASTA format.
 * Distance matrices between sequences can be generated using a variety
   of distance metrics.
 * Distance matrices can be imported or exported.
 * Phylogenetic trees can be constructed based on various distance-based
   tree reconstruction algorithms.
 * Trees can be saved in New Hampshire format.
 * Belvu can perform bootstrap phylogenetic reconstruction.

Etiketler: Arayüz Araç Takımı: GTK

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Tüm mevcut mimariler için indir
Mimari Paket Boyutu Kurulu Boyut Dosyalar
amd64 197,1 kB396,0 kB [dosya listesi]
arm64 188,7 kB388,0 kB [dosya listesi]
armel 180,3 kB343,0 kB [dosya listesi]
armhf 181,0 kB295,0 kB [dosya listesi]
i386 206,4 kB427,0 kB [dosya listesi]
mips 200,6 kB458,0 kB [dosya listesi]
mips64el 201,3 kB482,0 kB [dosya listesi]
mipsel 202,3 kB458,0 kB [dosya listesi]
ppc64el 204,9 kB504,0 kB [dosya listesi]
s390x 188,4 kB412,0 kB [dosya listesi]