Paket: ragout (2.3-2 ve diğerleri)

[ Kaynak: ragout  ]

Reference-Assisted Genome Ordering UTility

Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds).

The approach is based on the analysis of genome rearrangements (like inversions or chromosomal translocations) between the input genomes and reconstructing the most parsimonious structure of the target genome.

Ragout now supports both small and large genomes (of mammalian scale and complexity). The assembly of highly polymorphic genomes is currently limited.

ragout ile İlgili Diğer Paketler

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [amd64, arm64, ppc64el değil]

• dep: libgcc-s1 (>= 3.0) [armel, armhf, i386, mipsel değil]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [armel, armhf değil]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-networkx (>= 2.2)

  tool to create, manipulate and study complex networks (Python3)

• rec: sibelia

  comparative genomics tool

ragout indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	2.3-2+b1	2.074,3 kB	9.683,0 kB	[dosya listesi]
arm64	2.3-2+b1	2.068,8 kB	9.655,0 kB	[dosya listesi]
armel	2.3-2+b1	2.069,2 kB	9.649,0 kB	[dosya listesi]
armhf	2.3-2+b1	2.068,4 kB	9.613,0 kB	[dosya listesi]
i386	2.3-2+b1	2.085,8 kB	9.689,0 kB	[dosya listesi]
mips64el	2.3-2+b1	2.079,0 kB	9.721,0 kB	[dosya listesi]
mipsel	2.3-2+b1	2.079,0 kB	9.718,0 kB	[dosya listesi]
ppc64el	2.3-2+b1	2.084,3 kB	9.823,0 kB	[dosya listesi]
s390x	2.3-2+b1	2.071,4 kB	9.687,0 kB	[dosya listesi]