Paket: pizzly (0.37.3+ds-5)

[ Kaynak: pizzly  ]

Identifies gene fusions in RNA sequencing data

For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.

Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.

pizzly ile İlgili Diğer Paketler

• dep: kallisto

  near-optimal RNA-Seq quantification

• dep: libc6 (>= 2.29) [armel değil]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.30) [armel]

• dep: libgcc-s1 (>= 3.0) [armel, armhf, i386, mipsel değil]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libstdc++6 (>= 10.2) [armel]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 7) [armhf]

  dep: libstdc++6 (>= 9) [armel, armhf değil]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• rec: python3-h5py

  general-purpose Python interface to hdf5

pizzly indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	287,4 kB	876,0 kB	[dosya listesi]
arm64	251,7 kB	808,0 kB	[dosya listesi]
armel	240,5 kB	763,0 kB	[dosya listesi]
armhf	251,0 kB	591,0 kB	[dosya listesi]
i386	296,3 kB	883,0 kB	[dosya listesi]
mips64el	245,9 kB	962,0 kB	[dosya listesi]
mipsel	250,7 kB	940,0 kB	[dosya listesi]
ppc64el	282,7 kB	988,0 kB	[dosya listesi]
s390x	249,6 kB	876,0 kB	[dosya listesi]