Paket: lumpy-sv (0.3.1+dfsg-5)

[ Kaynak: lumpy-sv  ]

general probabilistic framework for structural variant discovery

LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency.

lumpy-sv ile İlgili Diğer Paketler

• dep: bamkit

  tools for common BAM file manipulations

• dep: libbamtools2.5.1 (>= 2.5.1+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64el]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libgzstream0 (>= 1.5+dfsg)

  provide functionality of zlib C-library in a C++ iostream

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [armel, armhf değil]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-numpy

  Fast array facility to the Python 3 language

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: samblaster

  marks duplicates, extracts discordant/split reads

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• rec: sambamba

  tools for working with SAM/BAM data

lumpy-sv indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	181,5 kB	631,0 kB	[dosya listesi]
arm64	159,7 kB	563,0 kB	[dosya listesi]
armel	153,3 kB	545,0 kB	[dosya listesi]
armhf	161,4 kB	433,0 kB	[dosya listesi]
i386	198,4 kB	673,0 kB	[dosya listesi]
mips64el	167,4 kB	720,0 kB	[dosya listesi]
mipsel	175,8 kB	708,0 kB	[dosya listesi]
ppc64el	183,2 kB	803,0 kB	[dosya listesi]