Paket: gmap (2021-02-22+ds-1)

[ Kaynak: gmap  ]

spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).

GSNAP can align bisulfite-treated DNA.

Etiketler: Alan: Biyoloji, field::biology:bioinformatics, field::biology:structural, Rol: Program, Amaç: Analiz

gmap ile İlgili Diğer Paketler

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: zlib1g (>= 1:1.2.6)

  compression library - runtime

gmap indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	11.332,0 kB	86.543,0 kB	[dosya listesi]
arm64	6.976,6 kB	57.915,0 kB	[dosya listesi]
armel	5.605,3 kB	43.621,0 kB	[dosya listesi]
armhf	5.756,4 kB	41.853,0 kB	[dosya listesi]
i386	5.907,0 kB	43.773,0 kB	[dosya listesi]
mips64el	5.324,5 kB	54.666,0 kB	[dosya listesi]
mipsel	5.291,6 kB	45.235,0 kB	[dosya listesi]
ppc64el	7.219,0 kB	60.727,0 kB	[dosya listesi]