Paket: chip-seq (1.5.5-3)

[ Kaynak: chip-seq  ]

tools performing common ChIP-Seq data analysis tasks

The ChIP-Seq software provides a set of tools performing common genome- wide ChIP- seq analysis tasks, including positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-poor regions. These tools exist as stand-alone C programs and perform the following tasks:

 1. Positional correlation analysis and generation of an aggregation
    plot (AP) (chipcor),
 2. Extraction of specific genome annotation features around reference
    anchor points (chipextract),
 3. Read centering or shifting (chipcenter),
 4. Narrow peak caller using a fixed width peak size (chippeak),
 5. Broad peak caller used for large regions of enrichment (chippart),
 6. Feature selection tool based on a read count threshold (chipscore).

Because the ChIP-Seq tools are primarily optimized for speed, they use their own compact format for ChIP-seq data representation called SGA (Simplified Genome Annotation). SGA is a line-oriented, tab-delimited plain text format.

chip-seq ile İlgili Diğer Paketler

• dep: chip-seq-data

  tools performing common ChIP-Seq data analysis tasks (data)

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.7) [amd64, arm64, ppc64el değil]

• dep: libmath-round-perl

  Perl extension for rounding numbers

chip-seq indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	98,7 kB	496,0 kB	[dosya listesi]
arm64	97,5 kB	456,0 kB	[dosya listesi]
armel	91,2 kB	418,0 kB	[dosya listesi]
armhf	90,3 kB	358,0 kB	[dosya listesi]
i386	98,1 kB	510,0 kB	[dosya listesi]
mips64el	99,7 kB	492,0 kB	[dosya listesi]
mipsel	94,5 kB	441,0 kB	[dosya listesi]
ppc64el	104,5 kB	1.040,0 kB	[dosya listesi]
s390x	93,0 kB	467,0 kB	[dosya listesi]