Package: tantan (49-2)

[ Source: tantan  ]

low complexity and tandem repeat masker for biosequences

tantan is a tool to mask simple regions (low complexity and short-period tandem repeats) in DNA, RNA, and protein sequences. The aim of tantan is to prevent false predictions when searching for homologous regions between two sequences. Simple repeats often align strongly to each other, causing false homology predictions.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Scope: scope::utility, works-with::biological-sequence

Other Packages Related to tantan

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0) [not armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4) [not armel, armhf]

  compression library - runtime

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf]

Download tantan

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Architecture	Package Size	Installed Size	Files
amd64	41.1 kB	120.0 kB	[list of files]
arm64	37.1 kB	144.0 kB	[list of files]
armel	36.9 kB	103.0 kB	[list of files]
armhf	34.8 kB	79.0 kB	[list of files]
i386	43.5 kB	119.0 kB	[list of files]
mips64el	41.1 kB	149.0 kB	[list of files]
ppc64el	44.0 kB	144.0 kB	[list of files]
s390x	44.2 kB	124.0 kB	[list of files]