Package: pirs (2.0.2+dfsg-12)

[ Source: pirs  ]

Profile based Illumina pair-end Reads Simulator

The program pIRS can be used for simulating Illumina PE reads, with a series of characters generated by Illumina sequencing platform, such as insert size distribution, sequencing error(substitution, insertion, deletion), quality score and GC content-coverage bias.

The insert size follows a normal distribution, so users should set the mean value and standard deviation. Usually the standard deviation is set as 1/20 of the mean value. The normal distribution by Box-Muller method is simulated.

The program simulates sequencing error, quality score and GC content- coverage bias according to the empirical distribution profile. Some default profiles counted from lots of real sequencing data are provided.

To simulate reads from diploid genome, users should simulate the diploid genome sequence firstly by setting the ratio of heterozygosis SNP, heterozygosis InDel and structure variation.

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• dep: gnuplot-qt

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• dep: libc6 (>= 2.34)

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• dep: libgcc-s1 (>= 3.0) [not armel, armhf, i386]

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  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libgzstream0 (>= 1.5+dfsg)

  provide functionality of zlib C-library in a C++ iostream

• dep: libstdc++6 (>= 13.1)

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• dep: pirs-profiles

  profile basd Illumina pair-end Reads Simulator (profile data)

• dep: zlib1g (>= 1:1.2.0.2)

  compression library - runtime

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Architecture	Package Size	Installed Size	Files
amd64	116.7 kB	390.0 kB	[list of files]
arm64	106.7 kB	422.0 kB	[list of files]
armel	102.8 kB	352.0 kB	[list of files]
armhf	102.6 kB	304.0 kB	[list of files]
i386	122.5 kB	392.0 kB	[list of files]
mips64el	115.4 kB	432.0 kB	[list of files]
ppc64el	117.0 kB	422.0 kB	[list of files]
s390x	113.8 kB	390.0 kB	[list of files]