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[ Source: amap-align  ]

Package: amap-align (2.2-4)

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Protein multiple alignment by sequence annealing

AMAP is a command line tool to perform multiple alignment of peptidic sequences. It utilizes posterior decoding, and a sequence-annealing alignment, instead of the traditional progressive alignment method. It is the only alignment program that allows one to control the sensitivity / specificity tradeoff. It is based on the ProbCons source code, but uses alignment metric accuracy and eliminates the consistency transformation.

The java visualisation tool of AMAP 2.2 is not yet packaged in Debian.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

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Download amap-align

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 129.2 kB319.0 kB [list of files]
armel 101.9 kB270.0 kB [list of files]
armhf 104.0 kB218.0 kB [list of files]
i386 107.7 kB278.0 kB [list of files]
kfreebsd-amd64 129.1 kB284.0 kB [list of files]
kfreebsd-i386 107.5 kB243.0 kB [list of files]
mips 120.3 kB326.0 kB [list of files]
mipsel 121.9 kB326.0 kB [list of files]
powerpc 118.4 kB290.0 kB [list of files]
s390x 115.8 kB339.0 kB [list of files]
sparc 105.5 kB295.0 kB [list of files]