Software Packages in "stretch", Subsection science

abacas (1.3.1-2)
Algorithm Based Automatic Contiguation of Assembled Sequences
abinit (7.8.2-2)
package for electronic structure calculations
abyss (1.9.0-1) [non-free]
de novo, parallel, sequence assembler for short reads
acedb-other (4.9.39+dfsg.01-5)
retrieval of DNA or protein sequences
acedb-other-belvu (4.9.39+dfsg.01-5)
multiple sequence alignment editor
acedb-other-dotter (4.9.39+dfsg.01-5)
visualisation of sequence similarity
aces3 (3.0.8-4+b1 [armel], 3.0.8-4 [amd64, armhf, i386, mips, mipsel, powerpc, ppc64el, s390x])
Advanced Concepts in Electronic Structure III
aces3-data (3.0.8-4)
Advanced Concepts in Electronic Structure III
achilles (2-8+b3 [amd64], 2-8+b2 [arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el, s390x])
An artificial life and evolution simulator
aegean (0.13.0+dfsg-1)
integrated genome analysis toolkit
aeskulap (0.2.2b1-13+b2 [amd64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el, s390x], 0.2.2b1-13 [arm64])
medical image viewer and DICOM network client
aevol (4.4-1+b3 [amd64], 4.4-1+b2 [arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el, s390x])
digital genetics model to run Evolution Experiments in silico
aghermann (1.0.5-1)
Sleep-research experiment manager
algotutor (0.8.6-1)
program for observing the intermediate steps of algorithm
alien-hunter (1.7-3)
Interpolated Variable Order Motifs to identify horizontally acquired DNA
altree (1.3.1-2+b2 [s390x], 1.3.1-2+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc], 1.3.1-2 [arm64, ppc64el])
program to perform phylogeny-based association and localization analysis
altree-examples (1.3.1-2)
example files for ALTree
amap-align (2.2-4+b2 [amd64], 2.2-4+b1 [i386], 2.2-4 [arm64, armel, armhf, mips, mipsel, powerpc, ppc64el, s390x])
Protein multiple alignment by sequence annealing
ampliconnoise (1.29-2)
removal of noise from 454 sequenced PCR amplicons
anfo (0.98-4+b1)
Short Read Aligner/Mapper from MPG
apbs (1.4-1)
Adaptive Poisson Boltzmann Solver
apertium-af-nl (0.2.0~r57554-1)
Apertium translation data for the Afrikaans-Dutch pair
apertium-apy (0.1.0~r61425-1)
Apertium APY service
apertium-br-fr (0.5.0~r61325-1)
Apertium linguistic data to translate between Breton and French
apertium-cy-en (0.1.1~r57554-2)
Apertium translation data for the Welsh-English pair
apertium-dev (3.4.0~r61013-3)
Development tools and library for Apertium
apertium-lex-tools (0.1.1~r60994-1)
Constraint-based lexical selection module
aragorn (1.2.36-4+b1 [s390x], 1.2.36-4 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
tRNA and tmRNA detection in nucleotide sequences
arb (6.0.2-2) [non-free]
Graphical suite for phylogenetic sequence analysis
arb-common (6.0.2-2) [non-free]
Graphical suite for phylogenetic sequence analysis (common files)
arden (1.0-1)
specificity control for read alignments using an artificial reference
ask (1.0.1-2)
Adaptive Sampling Kit for big experimental spaces
astromatic (1.0)
Astronomical pipeline software collection
astronomical-almanac (5.6-4)
astronomical almanac - calculate planet and star positions
autodock (4.2.6-2+b2 [amd64], 4.2.6-2+b1 [i386], 4.2.6-2 [arm64, armel, armhf, mips, mipsel, powerpc, ppc64el, s390x])
analysis of ligand binding to protein structure
autodock-getdata (4.2.6-2)
instructions for getData to collect compounds
autodock-test (4.2.6-2)
test files for AutoDock
autodock-vina (1.1.2-3+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 1.1.2-3 [arm64, ppc64el])
docking of small molecules to proteins
autodocktools (1.5.7~rc1+cvs.20140424-1) [non-free]
GUI to help set up, launch and analyze AutoDock dockings
autogrid (4.2.6-2+b2 [amd64], 4.2.6-2+b1 [i386], 4.2.6-2 [arm64, armel, armhf, mips, mipsel, powerpc, ppc64el, s390x])
pre-calculate binding of ligands to their receptor
autogrid-test (4.2.6-2)
test files for AutoGrid
avce00 (2.0.0-3)
Conversion of ESRI Arcinfo Vector Coverage in E00 format
avogadro (1.0.3-10.1+b2 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 1.0.3-10.1 [arm64, ppc64el])
Molecular Graphics and Modelling System
avogadro-data (1.0.3-10.1)
Molecular Graphics and Modelling System (Data Files)
aweather (0.8.1-1+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 0.8.1-1 [arm64, ppc64el])
Advanced Weather Monitoring Program
bamtools (2.4.0+dfsg-1)
toolkit for manipulating BAM (genome alignment) files
barrnap (0.7+dfsg-1)
rapid ribosomal RNA prediction
bauble (0.9.7-2)
biodiversity collection manager software application
beast-mcmc (1.8.2~754b844-1) [contrib]
Bayesian MCMC phylogenetic inference
bedtools (2.24.0-2)
suite of utilities for comparing genomic features
bedtools-test (2.24.0-2)
test data for the bedtools package
bibus (1.5.2-4)
bibliographic database
biogenesis (0.8-2)
artificial life program that simulates evolution of organisms
biomaj (1.2.3-4)
biological data-bank updater
biomaj-properties (1.2.3-4)
biological data-bank updater - example properties files
biomaj-watcher (1.2.2-2) [contrib]
biological data-bank updater - web interface
bioperl (1.6.924-3)
Perl tools for computational molecular biology
bioperl-run (1.6.9-3)
BioPerl wrappers: scripts
biosig-tools (1.3.0-2.1)
format conversion tools for biomedical data formats
biosquid (1.9g+cvs20050121-4)
utilities for biological sequence analysis
bist (0.5.2-1)
chemical drawing tool
bkchem (0.13.0-4)
Chemical structures editor
blast2 (1:2.2.26.20120620-8)
Basic Local Alignment Search Tool
blimps-utils (3.9-1) [non-free]
blocks database improved searcher
bmt (0.6-1)
software analysis benchmarking toolkit
bodr (10-1)
Blue Obelisk Data Repository
boinc-app-seti (7.28~svn2633-3)
SETI@home application for the BOINC client
boinc-app-seti-graphics (7.28~svn2633-3)
SETI@home application for the BOINC client (with graphics)
boolector (1.5.118.6b56be4.121013-1)
SMT solver for bit-vectors and arrays
bowtie (1.1.2-1)
Ultrafast memory-efficient short read aligner
bowtie-examples (1.1.2-1)
Examples for bowtie, the ultrafast memory-efficient short read aligner
bowtie2 (2.2.5-2)
ultrafast memory-efficient short read aligner
bowtie2-examples (2.2.5-2)
Examples for bowtie2
boxshade (3.3.1-8)
Pretty-printing of multiple sequence alignments
bppphyview (0.3.0-1)
Bio++ Phylogenetic Viewer
bwa (0.7.12-4)
Burrows-Wheeler Aligner
cafeobj (1.5.2-2)
new generation algebraic specification and programming language
cain (1.9-8)
simulations of chemical reactions
cain-examples (1.9-8)
simulations of chemical reactions
cain-solvers (1.9-8)
simulations of chemical reactions
caret (5.6.4~dfsg.1-3+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 5.6.4~dfsg.1-3 [arm64, ppc64el])
Computerized Anatomical Reconstruction and Editing Toolkit
cassiopee (1.0.3+dfsg-2)
index and search tool in genomic sequences
cba (0.3.6-4.1)
Continuous Beam Analysis
cbflib-bin (0.9.2.2-1)
utilities to manipulate CBF files
cbmc (5.1-1)
bounded model checker for C and C++ programs
cclib (1.1-1)
Parsers and algorithms for computational chemistry
cclib-data (1.1-1) [non-free]
Parsers and algorithms for computational chemistry (data files)
cd-hit (4.6.1-2012-08-27-2)
suite of programs designed to quickly group sequences
cdbfasta (0.99-20100722-1+b1)
Constant DataBase indexing and retrieval tools for multi-FASTA files
celestia (1.6.1+dfsg-3.1)
real-time visual space simulation
celestia-common (1.6.1+dfsg-3.1)
datafiles for Celestia, a real-time visual space simulation
celestia-common-nonfree (1.6.1-1) [non-free]
Non-free datafiles for Celestia, a real-time visual space simulation
celestia-glut (1.6.1+dfsg-3.1)
real-time visual space simulation (GLUT frontend)
cernlib (20061220+dfsg3-4.1)
CERNLIB data analysis suite - general use metapackage
cernlib-core (20061220+dfsg3-4.1)
CERNLIB data analysis suite - main libraries and programs
cernlib-extras (20061220+dfsg3-4.1)
CERNLIB data analysis suite - extra programs
cernlib-montecarlo (20061220+dfsg3-3)
CERNLIB Monte Carlo libraries
cg3 (0.9.9~r10793-1)
Tools for using the 3rd edition of Constraint Grammar (CG-3)
cgns-convert (3.1.4.2-2+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 3.1.4.2-2 [arm64, ppc64el])
CFD General Notation System - Conversion tools
ch5m3d (1.2.5+dfsg-1)
create and visualize 3-dimensional drawings of simple molecules
chemical-structures (2.2.dfsg.0-12)
set of molecular structures in open formats
chemtool (1.6.14-1)
chemical structures drawing program
chimeraslayer (20101212+dfsg-1)
detects likely chimeras in PCR amplified DNA
choreonoid (1.1.0+dfsg-6.2)
Integrated robotics GUI environment
choreonoid-data (1.1.0+dfsg-6.2)
Integrated robotics GUI environment - shared data
choreonoid-plugins-base (1.1.0+dfsg-6.2)
Integrated robotics GUI environment - core plug-ins
circos (0.67.7-1)
plotter for visualizing data
circos-tools (0.20-1)
plotter for visualizing data - helper utilities
ckon (0.7.1-3)
automatic build tool for ROOT data analysis software
clearcut (1.0.9-1)
extremely efficient phylogenetic tree reconstruction
clonalframe (1.2-3)
inference of bacterial microevolution using multilocus sequence data
clustalo (1.2.1-1)
General purpose multiple sequence alignment program for proteins
clustalw (2.1+lgpl-4)
global multiple nucleotide or peptide sequence alignment
clustalw-mpi (0.15-3) [non-free]
MPI-distributed global sequence alignment with ClustalW
clustalx (2.1+lgpl-3)
Multiple alignment of nucleic acid and protein sequences (graphical interface)
cluster3 (1.52a-1) [non-free]
Reimplementation of the Eisen-clustering software
cmtk (3.2.2-1.3)
Computational Morphometry Toolkit
cnrun (1.1.14-1)
NeuroML-capable neuronal network simulator
code-aster (11.5.0+dfsg2-3+b1)
Code_Aster finite element program - metapackage
code-aster-gui (1.13.1-2)
Graphical user interface for Code_Aster - client
code-aster-mpi-engine (11.5.0+dfsg2-3+b1)
Code_Aster finite element program - parallel binary
code-aster-run (1.13.1-2)
Graphical user interface for Code_Aster - server
code-aster-test (11.5.0+dfsg2-3)
Code_Aster finite element program - test files and examples
code-saturne (4.0.2+repack-1)
General purpose Computational Fluid Dynamics (CFD) software
code-saturne-bin (4.0.2+repack-1)
General purpose Computational Fluid Dynamics (CFD) software - binaries
code-saturne-data (4.0.2+repack-1)
General purpose Computational Fluid Dynamics (CFD) software - data
code-saturne-doc (4.0.2+repack-1)
General purpose Computational Fluid Dynamics (CFD) software - Documentation
code-saturne-include (4.0.2+repack-1)
General purpose Computational Fluid Dynamics (CFD) software - includes
coinor-cbc (2.8.12-1)
Coin-or branch-and-cut mixed integer programming solver
coinor-clp (1.15.10-1)
Coin-or linear programming solver
coinor-csdp (6.1.1-1)
A software package for semidefinite programming
coinor-libcbc3 (2.8.12-1)
Coin-or branch-and-cut mixed integer programming solver (shared libraries)
coinor-libcgl1 (0.58.9-1)
COIN-OR Cut Generation Library
coinor-libclp1 (1.15.10-1)
Coin-or linear programming solver (shared libraries)
coinor-libcoinutils3 (2.9.15-3)
Coin-or collection of utility classes (binaries and libraries)
coinor-libflopc++0 (1.0.6-3.1+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 1.0.6-3.1 [ppc64el])
Formulation of Linear Optimization Problems in C++
coinor-libosi1 (0.106.9-1)
COIN-OR Open Solver Interface
coinor-libsymphony3 (5.6.1-1)
COIN-OR solver for mixed-integer linear programs (shared libraries)
coinor-symphony (5.6.1-1)
COIN-OR solver for mixed-integer linear programs
concavity (0.1-2+b1)
predictor of protein ligand binding sites from structure and conservation
connectome-workbench (1.1.1-1)
brain visualization, analysis and discovery tool
conquest-common (1.4.17d-1)
ConQuest DICOM Server - common files
conquest-dbase (1.4.17d-1)
ConQuest DICOM Server - DBaseIII backend
conquest-mysql (1.4.17d-1)
ConQuest DICOM Server - MySQL backend
conquest-postgres (1.4.17d-1)
ConQuest DICOM Server - PostgreSQL backend
conquest-sqlite (1.4.17d-1)
ConQuest DICOM Server - SQLite backend
conservation-code (20110309.0-3)
protein sequence conservation scoring tool
cp2k (2.6.1-2)
Ab Initio Molecular Dynamics
cp2k-data (2.6.1-2)
Ab Initio Molecular Dynamics (data files)
cpl-plugin-amber (4.3.3+dfsg-4)
ESO data reduction pipeline for AMBER
cpl-plugin-amber-calib (4.3.3+dfsg-4) [contrib]
ESO data reduction pipeline calibration data downloader for AMBER
cpl-plugin-fors (5.0.11+dfsg-4)
ESO data reduction pipeline for FORS
cpl-plugin-fors-calib (5.0.11+dfsg-4) [contrib]
ESO data reduction pipeline calibration data downloader for FORS2
cpl-plugin-giraf (2.14+dfsg-4)
ESO data reduction pipeline for GIRAFFE
cpl-plugin-giraf-calib (2.14+dfsg-4) [contrib]
ESO data reduction pipeline calibration data downloader for GIRAFFE
cpl-plugin-hawki (1.8.18+dfsg-4+b1)
ESO data reduction pipeline for HAWK-I
cpl-plugin-hawki-calib (1.8.18+dfsg-4)
ESO data reduction pipeline calibration data downloader for HAWK-I
cpl-plugin-kmos (1.3.12+dfsg-4)
ESO data reduction pipeline for KMOS
cpl-plugin-kmos-calib (1.3.12+dfsg-4) [contrib]
ESO data reduction pipeline calibration data downloader for KMOS
cpl-plugin-muse (1.0.4+dfsg-4)
ESO data reduction pipeline for the MUSE instrument
cpl-plugin-muse-calib (1.0.4+dfsg-4) [contrib]
ESO data reduction pipeline calibration data downloader for MUSE
cpl-plugin-sinfo (2.6.0+dfsg-4)
ESO data reduction pipeline SINFONI
cpl-plugin-sinfo-calib (2.6.0+dfsg-4) [contrib]
ESO data reduction pipeline calibration data downloader for SINFONI
cpl-plugin-uves (5.5.2+dfsg-4)
ESO data reduction pipeline for UVES
cpl-plugin-uves-calib (5.5.2+dfsg-4) [contrib]
ESO data reduction pipeline calibration data downloader for UVES
cpl-plugin-vimos (2.9.15+dfsg-4)
ESO data reduction pipeline for VIMOS
cpl-plugin-vimos-calib (2.9.15+dfsg-4) [contrib]
ESO data reduction pipeline calibration data downloader for VIMOS
cpl-plugin-visir (3.5.1+dfsg-3)
ESO data reduction pipeline for the VISIR instrument
cpl-plugin-visir-calib (3.5.1+dfsg-3) [contrib]
ESO data reduction pipeline calibration data downloader for VISIR
cpl-plugin-xshoo (2.6.0+dfsg-3)
ESO data reduction pipeline for XSHOOTER
cpl-plugin-xshoo-calib (2.6.0+dfsg-3) [contrib]
ESO data reduction pipeline calibration data downloader for XSHOOTER
critterding (1.0-beta12.1-1.2)
Evolving Artificial Life
ctsim (5.2.0-2+b1 [s390x], 5.2.0-2 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
Computed tomography simulator
ctsim-help (5.2.0-2)
Online help file for CTSim
cufflinks (2.2.1-1+b1) [non-free]
Transcript assembly, differential expression and regulation for RNA-Seq
dans-gdal-scripts (0.23-3)
GDAL contributed tools by Geographic Information Network of Alaska
dcmtk (3.6.0-15+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 3.6.0-15 [arm64, ppc64el])
OFFIS DICOM toolkit command line utilities
dialign (2.2.1-7)
Segment-based multiple sequence alignment
dialign-tx (1.0.2-7+b1 [s390x], 1.0.2-7 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
Segment-based multiple sequence alignment
dialign-tx-data (1.0.2-7)
Segment-based multiple sequence alignment (data files)
dicomnifti (2.32.1-1)
converts DICOM files into the NIfTI format
dicompyler (0.4.2-2)
radiation therapy research platform
dimbl (0.12-2)
Distributed Memory Based Learner
discosnp (1.2.6-1)
discovering Single Nucleotide Polymorphism from raw set(s) of reads
disulfinder (1.2.11-4)
cysteines disulfide bonding state and connectivity predictor
disulfinder-data (1.2.11-4)
data files for predictor of disulfide bonds in proteins
dnaclust (3-3)
tool for clustering millions of short DNA sequences
doris (4.06~beta2+dfsg-3) [contrib]
Delft object-oriented radar interferometric software
dozzaqueux (3.41-1)
simulator for chemical mixtures
dozzaqueux-data (3.41-1)
databases for chemical mixtures
drawxtl (5.5-3)
crystal structure viewer
drslib (0.3.0a3-5)
Command-line tools for the Data Reference Syntax library
dsdp (5.8-9.1)
Software for Semidefinite Programming
dssp (2.2.1-2+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 2.2.1-2 [arm64, ppc64el])
protein secondary structure assignment based on 3D structure
dx (1:4.4.4-7+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el, s390x], 1:4.4.4-7 [arm64])
OpenDX (IBM Visualization Data Explorer) - main package
dxsamples (4.4.0-1)
Sample programs for the OpenDX Data Explorer
e00compr (1.0.1-2)
A program to read/write Arcinfo compressed E00 files
easychem (0.6-8)
Draw high-quality molecules and 2D chemical formulas
ecaccess (4.0.1-1)
clients to access ECMWF facilities
ecopcr (0.5.0-1)
estimate PCR barcode primers quality
edfbrowser (1.56-1)
viewer for biosignal storage files such as bdf and edf
edtsurf (0.2009-3+b1)
triangulated mesh surfaces for protein structures
eficas (6.4.0-1-1.1)
Graphical editor for Code Aster command files
elastix (4.7-2+b2)
toolbox for rigid and nonrigid registration of images
elki (0.6.5~20141030-1)
Data mining algorithm development framework
embassy-domainatrix (0.1.650-1)
Extra EMBOSS commands to handle domain classification file
embassy-domalign (0.1.650-1)
Extra EMBOSS commands for protein domain alignment
embassy-domsearch (1:0.1.650-1)
Extra EMBOSS commands to search for protein domains
embassy-phylip (3.69.650-2) [non-free]
EMBOSS conversions of the programs in the phylip package
emboss (6.6.0+dfsg-1)
european molecular biology open software suite
emboss-data (6.6.0+dfsg-1)
data files for the EMBOSS package
emboss-explorer (2.2.0-8)
web-based GUI to EMBOSS
emboss-lib (6.6.0+dfsg-1)
EMBOSS Libraries
engauge-digitizer (5.2-1)
interactively extracts numbers from bitmap graphs or maps
ent (1.2debian-1)
pseudorandom number sequence test program
epigrass (2.4.0-4)
scientific tool for simulations and scenario analysis in network epidemiology
epsilon-bin (0.9.2-3)
Library for wavelet image compression - tools
ergo (3.4.0-1+b1 [s390x], 3.4.0-1 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
Quantum chemistry program for large-scale calculations
eso-midas (15.02pl1.3-1)
European Southern Observatory Munich Image Data Analysis System
eso-pipelines (1.0)
ESO VLT Instrument pipeline collection
esorex (3.12-1)
Execution Tool for European Southern Observatory pipelines
esys-particle (2.3.3+dfsg1-1)
Software for particle-based numerical modelling. MPI version.
etsf-io (1.0.3-4+b2 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 1.0.3-4 [arm64, ppc64el])
Binary tools to check, merge and read ETSF files
exonerate (2.2.0-6)
generic tool for pairwise sequence comparison
expeyes (3.4.0-1)
hardware & software framework for developing science experiments
expeyes-clib (3.4.0-1)
hardware & software framework for developing science experiments
fastaq (3.6.1-1)
FASTA and FASTQ file manipulation tools
fastdnaml (1.2.2-10)
Tool for construction of phylogenetic trees of DNA sequences
fastlink (4.1P-fix95-3)
faster version of pedigree programs of Linkage
fastqc (0.11.2+dfsg-3)
quality control for high throughput sequence data
fasttree (2.1.8-2)
phylogenetic trees from alignments of nucleotide or protein sequences
fastx-toolkit (0.0.14-1)
FASTQ/A short nucleotide reads pre-processing tools
fcc (2.8-1)
Script to compile C/C++ programs and link to Fortran libraries
feedgnuplot (1.34-2)
Pipe-oriented frontend to Gnuplot
ffindex (0.9.9.3-2)
simple index/database for huge amounts of small files
figtree (1.4.2-1)
graphical phylogenetic tree viewer
filo (1.1+2011123001.1)
FILe and stream Operations
fitscut (1.4.4-3)
Extract cutouts from FITS image format files
fitsverify (4.17-2)
FITS File Format-Verification Tool
fityk (1.2.1-0.1)
general-purpose nonlinear curve fitting and data analysis
flexbar (2.50-1)
flexible barcode and adapter removal for sequencing platforms
flextra (5.0-3)
Trajectory model for tracing air transport phenomena
fractalnow (0.8.1-1+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 0.8.1-1 [arm64, ppc64el])
Fast, advanced fractal generator
(1.4.77-1.1)
Free42 is a re-implementation of the HP-42S calculator
freecad (0.14.3702+dfsg-3)
Extensible Open Source CAx program (alpha)
freecontact (1.0.21-3+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 1.0.21-3 [arm64, ppc64el])
fast protein contact predictor
freediams (0.9.4-1)
pharmaceutical drug prescription and interaction manager
freefoam (0.1.0+dfsg+1-3)
programs for Computational Fluid Dynamics (CFD)
freemedforms-common-resources (0.9.4-1)
common data for the FreeMedForms project applications
freemedforms-emr (0.9.4-1)
electronic medical record manager
freemedforms-emr-resources (0.9.4-1)
data for the FreeMedForms EMR
freemedforms-freedata (0.9.4-1)
free extra-data for the FreeMedForms project
freemedforms-libs (0.9.4-1)
common libs for the FreeMedForms project
freemedforms-project (0.9.4-1)
FreeMedForms project
freemedforms-theme (0.9.4-1)
theme for the FreeMedForms project
frogdata (0.4-1)
Data files for Frog
fsl (5.0.7-4) [non-free]
transitional dummy package
fsl
virtual package provided by fsl-5.0-core
fsl-5.0-core (5.0.7-4+b1 [s390x], 5.0.7-4 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el]) [non-free]
analysis tools for FMRI, MRI and DTI brain imaging
fsl-core (5.0.7-4) [non-free]
metapackage for the latest version of FSL
fslview (4.0.1-4)
viewer for (f)MRI and DTI data
ftools-fv (5.3+dfsg-7)
Tool for viewing and editing FITS format files
ftools-pow (5.3+dfsg-7)
Curve plotting and image display interface tool
funtools (1.4.6+git150228-1)
Minimal buy-in FITS utility package
fw4spl (0.9.2-3)
FrameWork for Software Production Line
fxt-tools (0.3.1-1)
Multithreaded tracing library
g3data (1:1.5.3-2.1)
extract data from scanned graphs
gabedit (2.4.8-1)
graphical user interface to Ab Initio packages
gamgi (0.17.1-1)
General Atomistic Modelling Graphic Interface (GAMGI)
gamgi-data (0.17.1-1)
General Atomistic Modelling Graphic Interface (data)
garlic (1.6-1.1)
A visualization program for biomolecules
gausssum (2.2.6.1-1)
parse and display Gaussian, GAMESS, and etc's output
gbrowse (2.54+dfsg-5)
GMOD Generic Genome Browser
gbrowse-calign (2.54+dfsg-5)
CAlign helper
gbrowse-data (2.54+dfsg-5)
Sample data to use GBrowse
gbutils (5.6.6-1)
utilities for command line econometrics
gcx (1.3-1.1)
astronomical image processing and photometry gtk+ application
gdal-bin (1.10.1+dfsg-9+b2 [mips, powerpc, s390x], 1.10.1+dfsg-9+b1 [amd64, arm64, armel, armhf, i386, mipsel, ppc64el])
Geospatial Data Abstraction Library - Utility programs
gdis (0.90-5)
molecular and crystal model viewer
gdis-data (0.90-5)
molecular and crystal model viewer (data files)
gdpc (2.2.5-3)
visualiser of molecular dynamic simulations
gdpc-examples (2.2.5-3)
example files for the gdpc program
geant321 (1:3.21.14.dfsg-11)
[Physics] Particle detector description and simulation tool
geant321-data (1:3.21.14.dfsg-11)
[Physics] Data for GEANT 3.21 detector simulator
gelemental (1.2.0-9)
Periodic Table viewer
genometools (1.5.6-1)
versatile genome analysis toolkit
genometools-common (1.5.6-1)
shared data files for GenomeTools
gentle (1.9+cvs20100605+dfsg1-3+b1 [s390x], 1.9+cvs20100605+dfsg1-3 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
suite to plan genetic cloning
geotiff-bin (1.4.1-1+b1)
GeoTIFF (geografic enabled TIFF) library -- tools
gerris (20131206+dfsg-6)
Fluid Flow Solver
gerris-mpi (20131206+dfsg-6)
Fluid Flow Solver
getdata (0.2-1)
management of external databases
gff2aplot (2.0-7)
pair-wise alignment-plots for genomic sequences in PostScript
gff2ps (0.98d-4)
produces PostScript graphical output from GFF-files
gfsview (20121130+dfsg-1)
graphical viewer for Gerris simulation files
ghkl (4.99.99.1955-1+b1 [amd64, arm64, armel, armhf, i386, mipsel, powerpc, ppc64el, s390x], 4.99.99.1955-1 [mips])
diffractometer computation control application
giira (0.0.20140210-2)
RNA-Seq driven gene finding incorporating ambiguous reads
glam2 (1064-3)
gapped protein motifs from unaligned sequences
gliese (3.0.95-2) [non-free]
stellar data set from the Third Catalogue of Nearby Stars
glueviz (0.5.2+dfsg-1)
Linked data visualization
gmap (2015-07-23-1) [non-free]
spliced and SNP-tolerant alignment for mRNA and short reads
gmt (5.1.2+dfsg1-1)
Generic Mapping Tools
gmt-common (5.1.2+dfsg1-1)
Generic Mapping Tools - Architecture-independent files
gmt-dcw (1.1.1-3)
Digital Chart of the World (DCW) for GMT
gmt-gshhg (2.3.4-2)
Global Self-consistent Hierarchical High-resolution Geography (GSHHG)
gmt-gshhg-full (2.3.4-2)
Full resolution coastlines for the Generic Mapping Tools
gmt-gshhg-high (2.3.4-2)
High resolution coastlines for the Generic Mapping Tools
gmt-gshhg-low (2.3.4-2)
Low resolution coastlines for the Generic Mapping Tools
gpaw-data (0.9.11271-1)
gpaw datasets/setups
gperiodic (2.0.10-7)
periodic table application
gpiv (0.6.1-2.3+b1 [s390x], 0.6.1-2.3 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
GUI program for Particle Image Velocimetry
gpiv-mpi (0.6.1-2.3+b1 [s390x], 0.6.1-2.3 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
GUI program for Particle Image Velocimetry - MPI version
gpivtools (0.6.0-3.1+b1 [s390x], 0.6.0-3.1 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
command line programs for Particle Image Velocimetry
gpivtools-mpi (0.6.0-3.1+b1 [s390x], 0.6.0-3.1 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
command line programs for Particle Image Velocimetry - MPI version
gpx (0~20140109+git3570fc9-2+b1 [s390x], 0~20140109+git3570fc9-2 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
Gcode to x3g conversion post processor
gpx2shp (0.71.0-2)
convert GPS or GPX file to ESRI Shape file
gr-fcdproplus (3.7.11-3)
Funcube Dongle Pro Plus controller for GNU Radio
grass (6.4.4-1)
Geographic Resources Analysis Support System (GRASS GIS)
grass-core (6.4.4-1+b1)
GRASS GIS core components
grass-gui (6.4.4-1+b1)
GRASS GIS graphical user interfaces
gravit (0.5.1+dfsg-2)
visually stunning gravity simulator
gravit-data (0.5.1+dfsg-2)
data files for Gravit
grinder (0.5.3-3)
Versatile omics shotgun and amplicon sequencing read simulator
gromacs (5.0.6-1)
Molecular dynamics simulator, with building and analysis tools
gromacs-data (5.0.6-1)
GROMACS molecular dynamics sim, data and documentation
gromacs-mpich (5.0.6-1)
Molecular dynamics sim, binaries for MPICH parallelization
gromacs-openmpi (5.0.6-1)
Molecular dynamics sim, binaries for OpenMPI parallelization
gvb (1.4-1)
visual simulator of 1 and 2-dimensional vibrations
gwama (2.1+dfsg-2)
Genome-Wide Association Meta Analysis
gwyddion (2.41-1+b1)
Scanning Probe Microscopy visualization and analysis tool
gwyddion-common (2.41-1)
architecture-independent files for Gwyddion SPM analysis tool
gwyddion-plugins (2.41-1+b1)
plugins for Gwyddion SPM analysis tool
gyoto (1.0.2-1)
General relativistic ray-tracing
h5utils (1.12.1-3)
HDF5 files visualization tools
harminv (1.4-1+b1)
extraction of complex frequencies and amplitudes from time series
hdf5-helpers (1.8.13+docs-15)
Hierarchical Data Format 5 (HDF5) - Helper tools
hdf5-tools (1.8.13+docs-15)
Hierarchical Data Format 5 (HDF5) - Runtime tools
hfst (3.8.2~r4145-1)
Helsinki Finite-State Transducer Technology
hhsuite (2.0.16-5)
sensitive protein sequence searching based on HMM-HMM alignment
hhsuite-data (2.0.16-5)
sensitive protein sequence searching based on HMM-HMM alignment (data)
hidrd (0.2.0-11)
tools for parsing and generating HID report descriptors
hmmer (3.1b2-1)
profile hidden Markov models for protein sequence analysis
hmmer2 (2.3.2-8)
profile hidden Markov models for protein sequence analysis
hmmer2-pvm (2.3.2-8)
HMMER programs with PVM (Parallel Virtual Machine) support
hodie (1.5-2)
prints the date in latin
hpcc (1.4.3-1)
HPC Challenge benchmark
hyphy-common (2.2.5+dfsg-2)
Hypothesis testing using Phylogenies (common files)
hyphy-mpi (2.2.5+dfsg-2)
Hypothesis testing using Phylogenies (MPI version)
hyphy-pt (2.2.5+dfsg-2)
Hypothesis testing using Phylogenies (pthreads version)
hyphygui (2.2.5+dfsg-2)
Hypothesis testing using Phylogenies (GTK+ gui)
idba (1.1.2-1+b1 [s390x], 1.1.2-1 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el])
iterative De Bruijn Graph De Novo short read assembler for transcriptome
igv (2.3.57+dfsg-1) [non-free]
Integrative Genomics Viewer
imagej (1.49i+dfsg-1)
Image processing program inspired by NIH Image
imagevis3d (3.1.0-4)
desktop volume rendering application for large data
imview (1.1.9c-12+b3 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 1.1.9c-12+b2 [ppc64el], 1.1.9c-12+b1 [arm64])
Image viewing and analysis application
indigo-utils (1.1.12-1)
Organic Chemistry Toolkit Utilities
infernal (1.1.1-2)
inference of RNA secondary structural alignments
ipig (0.0.r5-1)
integrating PSMs into genome browser visualisations
ismrmrd-schema (1.2.3-2)
ISMRM Raw Data format (ISMRMRD) - XML schema
ismrmrd-tools (1.2.3-2)
ISMRM Raw Data format (ISMRMRD) - binaries
jalview (2.7.dfsg-4)
multiple alignment editor
jblas (1.2.3-6)
fast linear algebra library for Java
jellyfish (2.2.3-1)
count k-mers in DNA sequences
jellyfish-examples (2.2.3-1)
count k-mers in DNA sequences (examples for testing)
jemboss (6.6.0+dfsg-1)
graphical user interface to EMBOSS
jmol (12.2.32+dfsg2-1)
Molecular Viewer
julia (0.3.10-1)
high-performance programming language for technical computing
julia-factcheck (0.1.2-2)
Midje-like testing for Julia
kalign (1:2.03+20110620-2)
Global and progressive multiple sequence alignment
kalzium (4:4.14.2-1)
periodic table and chemistry tools
kalzium-data (4:4.14.2-1)
data files for Kalzium
kissplice (2.3.1-1)
Detection of various kinds of polymorphisms in RNA-seq data
klustakwik (2.0.1-1+b1)
automatic sorting of the samples (spikes) into clusters
kmc (2.0+dfsg-2)
count kmers in genomic sequences
kmer (0~20150520+2004-1+b1)
suite of tools for DNA sequence analysis
konclude (0.6.1-1)
tableau-based description logic reasoner for the semantic web
kst (2.0.3-4)
scientific data plotting tool
kst-data (2.0.3-4)
set of data files for kst
kstars (4:4.14.2-1)
desktop planetarium for KDE
kstars-data (4:4.14.2-1)
data files for KStars desktop planetarium
kstars-data-extra-tycho2 (1.1r1-9) [non-free]
Tycho-2 star catalog for KStars
kxterm (20061220+dfsg3-4.1)
CERNLIB data analysis suite - KUIP terminal emulator
lammps (0~20150313.gitfa668e1-1)
Molecular Dynamics Simulator
last-align (588-1)
genome-scale comparison of biological sequences
lbt (1.2.2-5+b1)
converts from LTL formulas to B├╝chi automata
lhapdf-pdfsets-minimal (5.9.1-3)
Minimal PDF Sets of LHAPDF
libadios-bin (1.8.0-5)
ADIOS Adaptable IO system for simulations - binaries
libapertium3-3.4-0 (3.4.0~r61013-3)
Shared library for Apertium
libcassie1 (1.0.3+dfsg-2)
library implementating search algorithms
libcg3-0 (0.9.9~r10793-1)
Runtime for CG-3
libclblas-bin (2.4-2)
OpenCL BLAS library (executables)
libdynamicedt3d1.6 (1.6.8+dfsg-1)
Incrementally updatable Euclidean distance transform library
libgeotiff-epsg (1.4.1-1) [non-free]
GeoTIFF library -- EPSG Geodetic Parameter Dataset
libgfsgl0 (20121130+dfsg-1)
graphical viewer for Gerris simulation files. Shared library
libghemical-data (3.0.0-4)
Molecular Modelling Library (data files)
libgnuradio-fcdproplus0 (3.7.11-3)
Funcube Dongle Pro Plus controller for GNU Radio
libgrits5 (0.8.1-1)
Grits is a Virtual Globe library
libgyoto4 (1.0.2-1)
General relativistic geodesic integration and ray-tracing
libhfst40 (3.8.2~r4145-1)
Helsinki Finite-State Transducer Technology Libraries
libismrmrd1.2 (1.2.3-2)
ISMRM Raw Data format (ISMRMRD) - shared library
libjs-mgrs (0.0.3-1)
Javascript for converting between WGS84 lat/lng and MGRS coordinates
libjs-proj4 (2.3.7+ds-1)
JavaScript library to transform point coordinates systems
liblas-bin (1.8.0-3)
ASPRS LiDAR data translation toolset
liblinear-tools (1.8+dfsg-5)
Standalone applications for LIBLINEAR
liblttoolbox3-3.3-0 (3.3.2~r61000-3)
Shared library for lttoolbox
libncarg-bin (6.3.0-3~exp1)
NCAR command-language library - development tools
libncarg-data (6.3.0-3~exp1)
NCAR command-language library - Data
libocas-tools (0.97+dfsg-1)
Standalone applications implementing the OCAS solver
liboctomap1.6 (1.6.8+dfsg-1)
3D occupancy grid mapping approach library for mapping
liboctovis1.6 (1.6.8+dfsg-1)
Visualization library for OctoMap
libpwiz-tools (3.0.6585-2.1)
ProteoWizard command line tools
libqgis-customwidgets (2.8.2+dfsg-3)
QGIS custom widgets for Qt Designer
libqgis-server2.8.2 (2.8.2+dfsg-3)
QGIS - shared server library
librasterlite2-1 (1.0.0~rc0+devel1-2)
library for huge raster coverages using a SpatiaLite DBMS
libsilo-bin (4.10.2-1)
Utilities to manipulate libsilo files
libsimgrid3.11 (3.11.1-10)
Toolkit for scalable simulation of distributed applications
libxy-bin (1.3-1)
xylib - utilities
limereg (1.4.0-1)
Lightweight Image Registration
litl-tools (0.1.6+dfsg-1)
Lightweight Trace Library - tools
logcentral (2.7-1)
Logging service for distributed applications
logcentral-tools (2.7-1)
Logging service for distributed applications
logol (1.7.2-2)
Pattern matching tool using Logol language
logol-bin (1.7.2-2)
Pattern matching tool using Logol language
loki (2.4.7.4-5)
MCMC linkage analysis on general pedigrees
looptools (2.8-1)
Integral Evaluator of One-loop Feynman Diagram
ltrsift (1.0.2-3)
postprocessing and classification of LTR retrotransposons
ltrsift-examples (1.0.2-3)
example data for LTRsift
lttoolbox-dev (3.3.2~r61000-3)
Development tools and library for lttoolbox
lutefisk (1.0.7+dfsg-4)
de novo interpretation of peptide CID spectra
macs (2.0.9.1-1)
Model-based Analysis of ChIP-Seq on short reads sequencers
macsyfinder (1.0.2-1)
Detection of macromolecular systems in protein datasets.
mafft (7.245-1)
Multiple alignment program for amino acid or nucleotide sequences
mapsembler2 (2.2.3+dfsg-2)
bioinformatics targeted assembly software
maq (0.7.1-5+b1)
maps short fixed-length polymorphic DNA sequence reads to reference sequences
maqview (0.2.5-6+b1)
graphical read alignment viewer for short gene sequences
massxpert (3.5.0-2)
linear polymer mass spectrometry software
massxpert-data (3.5.0-2)
linear polymer mass spectrometry software - arch-indep data
matlab-gdf (0.1.2-2) [contrib]
IO library for the GDF -- Matlab interface
maude (2.6-6)
high-performance logical framework
mauve-aligner (2.4.0+4734-2)
multiple genome alignment
mayavi2 (4.3.1-4.1)
scientific visualization package for 2-D and 3-D data
mbt (3.2.10-4)
memory-based tagger-generator and tagger
meep (1.3-3)
software package for FDTD simulation
meep-lam4 (1.3-1)
software package for FDTD simulation, parallel (OpenMPI) version
meep-mpi-default (1.3-2)
software package for FDTD simulation, parallel (OpenMPI) version
meep-mpich2 (1.3-2)
software package for FDTD simulation, parallel (OpenMPI) version
meep-openmpi (1.3-2)
software package for FDTD simulation, parallel (OpenMPI) version
melting (4.3.1+dfsg-1)
compute the melting temperature of nucleic acid duplex
melting-gui (4.3.1+dfsg-1)
graphical interface to compute the melting temperature of nucleic acid duplex
merkaartor (0.18.1-3+b6 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 0.18.1-3+b2 [arm64, ppc64el])
map editor for OpenStreetMap.org
meryl (0~20150520+2004-1+b1)
in- and out-of-core kmer counting and utilities
metastudent (2.0.1-1)
predictor of Gene Ontology terms from protein sequence
metastudent-data (2.0.0-3)
predictor of Gene Ontology terms from protein sequence - data files
metastudent-data-2 (1.0.0-1)
predictor of Gene Ontology terms from protein sequence - data #2
mgltools-bhtree (1.5.7~rc1+cvs.20140424-1) [non-free]
Bhtree library extension module
mgltools-cadd (1.5.7~rc1+cvs.20140424-1) [non-free]
Computer Aided Drug Discovery (CADD) Pipeline
mgltools-cmolkit (1.5.7~rc1+cvs.20140424-1) [non-free]
Python classes to interpret trajectories of Gromacs
mgltools-dejavu (1.5.7~rc1+cvs.20140424-1) [non-free]
visualization of 3D geometry using the OpenGL with Python
mgltools-geomutils (1.5.7~rc1+cvs.20140424-1) [non-free]
Python library for geometric analyses
mgltools-mglutil (1.5.7~rc1+cvs.20140424-1) [non-free]
Molecular Graphics Laboratory utility collection
mgltools-molkit (1.5.7~rc1+cvs.20140424-1) [non-free]
Python classes to read and manipulate molecules
mgltools-networkeditor (1.5.7~rc1+cvs.20140424-1) [non-free]
Python GUI library for the editing of networks
mgltools-opengltk (1.5.7~rc1+cvs.20140424-1) [non-free]
Opengltk Python extension
mgltools-pmv (1.5.7~rc1+cvs.20140424-2) [non-free]
Python-based Molecular Viewer
mgltools-pmv-test (1.5.7~rc1+cvs.20140424-2) [non-free]
Python-based Molecular Viewer (functionality tests)
mgltools-pyautodock (1.5.7~rc1+cvs.20140424-1) [non-free]
Python implementation of autodock
mgltools-pybabel (1.5.7~rc1+cvs.20140424-1) [non-free]
molecular structure file access and interpretation
mgltools-pyglf (1.5.7~rc1+cvs.20140424-1) [non-free]
GLF library Python extension to write text in OpenGL
mgltools-scenario2 (1.5.7~rc1+cvs.20140424-1) [non-free]
Python-based viewer of molecular structures
mgltools-sff (1.5.6~rc3~cvs.20120206-1) [non-free]
Simple Force Field for Python
mgltools-support (1.5.7~rc1+cvs.20140424-1) [non-free]
Update mechanism of MGLTools
mgltools-symserv (1.5.7~rc1+cvs.20140424-1) [non-free]
Symetry server
mgltools-utpackages (1.5.7~rc1+cvs.20140424-1) [non-free]
UT Austin software Python extensions
mgltools-viewerframework (1.5.7~rc1+cvs.20140424-1) [non-free]
ViewerFramework supports building visualization applications
mgltools-vision (1.5.7~rc1+cvs.20140424+dfsg-1) [non-free]
Python-based Visual Programming Environment
mgltools-visionlibraries (1.5.7~rc1+cvs.20140424-1) [non-free]
Extensions for Python-based Visual Programming Environment
mgltools-volume (1.5.7~rc1+cvs.20140424-1) [non-free]
Volume rendering Python package
mgltools-webservices (1.5.7~rc1+cvs.20140424-1) [non-free]
webservices for components of autodocktools
mia-tools (2.2.3-2)
Command line tools for gray scale image processing
mia-viewit (1.0.1-1)
Viewer program for 3D data sets created by using MIA
mialmpick (0.2.10-2)
Tools for landmark picking in 3D volume data sets
microbegps (1.0.0-1)
explorative taxonomic profiling tool for metagenomic data
microbiomeutil (20101212+dfsg-1)
Microbiome Analysis Utilities
microbiomeutil-data (20101212+dfsg-1)
Reference 16S sequences and NAST-alignments used by microbiomeutil tools
microhope (3.4.0-1)
hardware & software framework to learn microcontrollers
minc-tools (2.2.00-6)
MNI medical image format tools
minia (1.6906-1)
short-read biological sequence assembler
minisat (1:2.2.1-5+b2 [s390x], 1:2.2.1-5+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
Fast and lightweight SAT solver
minisat+ (1.0-2)
solver for pseudo-Boolean constraints
minisat2 (1:2.2.1-5+b2 [s390x], 1:2.2.1-5+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
Transitional package for minisat
minisat2
virtual package provided by minisat
mipe (1.1-4)
Tools to store PCR-derived data
mira-assembler (4.9.5-1)
Whole Genome Shotgun and EST Sequence Assembler
mira-examples (4.9.5-1)
files to experiment with the mira assembler
missfits (2.8.0-1)
Basic maintenance and packaging tasks on FITS files
mitools (1.8.8-1)
view, convert and perform basic maths with medical image datasets
mldemos (0.5.1-3+b1 [amd64, armel, armhf, i386, mips, powerpc, s390x], 0.5.1-3 [arm64, mipsel, ppc64el])
Machine Learning Demos (MLDemos) with Visualization
mlpack-bin (1.0.12-4+b1 [amd64, i386], 1.0.12-4 [arm64, armel, armhf, mips, mipsel, powerpc, ppc64el, s390x])
intuitive, fast, scalable C++ machine learning library (binaries)
mlv-smile (1.47-3)
Find statistically significant patterns in sequences
mmass (5.5.0-4)
Mass spectrometry tool for proteomics
mmass-modules (5.5.0-4)
Mass spectrometry tool for proteomics - extension modules
mobyle (1.5.3+dfsg-2)
Web portal that provides web forms for command-line software
mobyle-programs (5.1.2-1)
Program descriptions for the mobyle portal
mobyle-tutorials (1.5.0-1)
program tutorials for the mobyle portal
mobyle-utils (1.5.3+dfsg-2)
binary tools used by Mobyle
molds (0.3.1-1)
Semi-empirical electronic structure and molecular dynamics
mona (1.4-15-1.1+b1)
theorem prover based on automata
montage (3.3+dfsg-1)
Toolkit for assembling FITS images into mosaics
montage-gridtools (3.3+dfsg-1)
Create files to run montage on the grid
montecarlo-base (20061220+dfsg3-3)
[Physics] Common files for CERNLIB Monte Carlo libraries
montecarlo-data (20061220+dfsg3-3)
[Physics] data for CERNLIB Monte Carlo libraries
mopac7-bin (1.15-6)
Semi-empirical Quantum Chemistry Library (binaries)
morse-simulator (1.2.2-1)
Multi-OpenRobot Simulation Engine
morse-simulator-data (1.2.2-1)
Multi-OpenRobot Simulation Engine
mothur (1.33.3+dfsg-2)
sequence analysis suite for research on microbiota
mothur-mpi (1.33.3+dfsg-2)
mpi-enabled binary for mothur
mpb (1.5-2+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 1.5-2 [arm64, ppc64el])
MIT Photonic-Bands
mpb-mpi (1.5-2+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 1.5-2 [arm64, ppc64el])
MIT Photonic-Bands, parallel (mpich) version
mpb-scm (1.5-2)
MIT Photonic-Bands initialisation files
mpqc (2.3.1-16+b1 [mips, mipsel, s390x], 2.3.1-16 [amd64, arm64, armel, armhf, i386, powerpc, ppc64el])
Massively Parallel Quantum Chemistry Program
mpqc-openmpi (2.3.1-16)
Massively Parallel Quantum Chemistry Program (OpenMPI transitional package)
mpqc-support (2.3.1-16+b1 [mips, mipsel, s390x], 2.3.1-16 [amd64, arm64, armel, armhf, i386, powerpc, ppc64el])
Massively Parallel Quantum Chemistry Program (support tools)
mrbayes (3.2.5+dfsg-1)
Bayesian Inference of Phylogeny
mrbayes-mpi (3.2.5+dfsg-1)
Bayesian Inference of Phylogeny - mpi version
mriconvert (1:2.0.7-2)
medical image file conversion utility
mricron (0.20140804.1~dfsg.1-1)
magnetic resonance image conversion, viewing and analysis
mricron-data (0.20140804.1~dfsg.1-1)
data files for MRIcron
mrpt-apps (1:1.3.0-1+b1)
Mobile Robot Programming Toolkit - Console and GUI applications
mrs (6.0.5+dfsg-1)
Information Retrieval System for Biomedical databanks
mrtrix (0.2.12-1)
diffusion-weighted MRI white matter tractography
mssstest (3.0-3) [non-free]
Normalisation of disease scores for patients with Multiple Sclerosis
mummer (3.23~dfsg-3)
Efficient sequence alignment of full genomes
murasaki (1.68.6-3)
homology detection tool across multiple large genomes
murasaki-common (1.68.6-3)
homology detection tool across multiple large genomes (common files)
murasaki-mpi (1.68.6-3)
homology detection tool across multiple large genomes (MPI-version)
muscle (1:3.8.31-1+b1)
Multiple alignment program of protein sequences
music-bin (1.0.7-1.2+b1 [amd64, armel, armhf, i386, powerpc], 1.0.7-1.2 [arm64, mips, mipsel, ppc64el])
Multi-Simulation Coordinator for MPI -- Utilities
mustang (3.2.2-1+b2 [s390x], 3.2.2-1+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
multiple structural alignment of proteins
mustang-testdata (3.2.2-1)
multiple structural alignment of proteins, test data
nast-ier (20101212+dfsg-1)
NAST-based DNA alignment tool
nautic (1.5-1.1)
computation of observer position in astro-navigation
ncbi-blast+ (2.2.30-4)
next generation suite of BLAST sequence search tools
ncbi-blast+-legacy (2.2.30-4)
NCBI Blast legacy call script
ncbi-epcr (2.3.12-1-2)
Tool to test a DNA sequence for the presence of sequence tagged sites
ncbi-rrna-data (6.1.20120620-8)
large rRNA BLAST databases distributed with the NCBI toolkit
ncbi-seg (0.0.20000620-2)
tool to mask segments of low compositional complexity in amino acid sequences
ncbi-tools-bin (6.1.20120620-8)
NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 (6.1.20120620-8)
NCBI libraries for biology applications (X-based utilities)
ncl-ncarg (6.3.0-3~exp1)
NCAR Command Language and NCAR graphics
nco (4.5.1-1)
Command-line operators to analyze netCDF files
ncoils (2002-4)
coiled coil secondary structure prediction
ncview (2.1.5+ds1-2)
X11 visual browser for NetCDF format files
neobio (0.0.20030929-1.1)
computes alignments of amino acid and nucleotide sequences
netcdf-bin (1:4.1.3-7.2)
Programs for reading and writing NetCDF files
neurodebian (0.37.2)
neuroscience-oriented distribution - repository configuration
neurodebian-archive-keyring (0.37.2)
neuroscience-oriented distribution - GnuPG archive keys
neurodebian-desktop (0.37.2)
neuroscience-oriented distribution - desktop integration
neurodebian-dev (0.37.2)
neuroscience-oriented distribution - development tools
neurodebian-popularity-contest (0.37.2)
neuroscience-oriented distribution - popcon integration
nexus-tools (4.3.2-svn1921-2+b2 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 4.3.2-svn1921-2+b1 [arm64, ppc64el])
NeXus scientific data file format - applications
njplot (2.4-2+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 2.4-2 [arm64, ppc64el])
phylogenetic tree drawing program
node-mgrs (0.0.3-1)
Utility for converting between WGS84 lat/lng and MGRS coordinates
node-proj4 (2.3.7+ds-1)
Node.js module to transform point coordinates systems
node-sphericalmercator (1.0.1-2)
Spherical Mercator projection support for NodeJS
node-srs (0.4.8+dfsg-1)
spatial reference library for Node.js
norsnet (1.0.17-1)
tool to identify unstructured loops in proteins
norsp (1.0.6-1)
predictor of non-regular secondary structure
numdiff (5.8.1-2)
Compare similar files with numeric fields
oar-api (2.5.4-2)
transitional dummy package
oar-common (2.5.4-2)
OAR batch scheduler common package
oar-node (2.5.4-2)
OAR batch scheduler node package
oar-restful-api (2.5.4-2)
OAR web services
oar-server (2.5.4-2)
OAR batch scheduler server package
oar-server-mysql (2.5.4-2)
OAR batch scheduler MySQL server backend package
oar-server-pgsql (2.5.4-2)
OAR batch scheduler PostgreSQL server backend package
oar-user (2.5.4-2)
OAR batch scheduler user package
oar-user-mysql (2.5.4-2)
OAR batch scheduler MySQL user backend package
oar-user-pgsql (2.5.4-2)
OAR batch scheduler PostgreSQL user backend package
oar-web-status (2.5.4-2)
OAR batch scheduler visualization tool package
obdgpslogger (0.16-1.2+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 0.16-1.2 [arm64, ppc64el])
suite of tools to log OBDII and GPS data
objcryst-fox (1.9.6.0-2.1)
Free Objects for Xtallography
oce-draw (0.15-6)
OpenCASCADE Community Edition CAE platform shared library
octave-biosig (1.3.0-2.1)
Octave bindings for BioSig library
octave-gdf (0.1.2-2+b4 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 0.1.2-2+b2 [ppc64el], 0.1.2-2+b1 [arm64])
IO library for the GDF -- Octave interface
octave-lhapdf (5.9.1-3+b2)
Octave Bindings for LHAPDF
octave-psychtoolbox-3 (3.0.11.20140816.dfsg1-1+b2)
toolbox for vision research -- Octave bindings
octomap-tools (1.6.8+dfsg-1)
Tools for 3D occupancy grid mapping
octovis (1.6.8+dfsg-1)
Visualization tool for OctoMap
odin (1.8.8-1)
develop, simulate and run magnetic resonance sequences
ogdi-bin (3.2.0~beta2-7.1+b1)
Open Geographic Datastore Interface Library -- utilities
openbabel (2.3.2+dfsg-2.1)
Chemical toolbox utilities (cli)
openbabel-gui (2.3.2+dfsg-2.1)
Chemical toolbox utilities (graphical user interface)
opencaster (3.2.2+dfsg-1.1)
MPEG2 transport stream data generator and packet manipulator
openmolar (0.6.2-2)
dental practice management software
openmx (3.7.6-1+b1 [mips, mipsel, s390x], 3.7.6-1 [amd64, arm64, armel, armhf, i386, powerpc, ppc64el])
package for nano-scale material simulations
openmx-data (3.7.6-1)
package for nano-scale material simulations (data)
openrocket (15.03)
Model Rocket Simulator
opensesame (0.27.4-2)
graphical experiment builder for the social sciences
openturns-examples (1.5-7)
examples of OpenTURNS functionalities
openturns-validation (1.5-7)
validation files for OpenTURNS
openuniverse (1.0beta3.1+dfsg-3+b2)
3D Universe Simulator
openuniverse-common (1.0beta3.1+dfsg-3)
3D Universe Simulator data files
optgeo (2.21-4)
simulator for geometrical optics
opticalraytracer (3.2-1.1)
Virtual lens design workshop
origami (1.2.7+really0.7.4-1)
command-line management tool for Folding @ Home clients
orthanc (0.9.1+dfsg-1)
Lightweight, RESTful DICOM server for medical imaging
orthanc-imagej (1.0.0+dfsg-1)
ImageJ plugin to import images from Orthanc
orthanc-postgresql (1.1-1)
Plugins to use PostgreSQL as a database back-end to Orthanc
orthanc-webviewer (1.1-1)
Web viewer of medical images for Orthanc
ossim-core (1.8.16-4)
OSSIM core utilities
otf-trace (1.12.5+dfsg-1+b1 [s390x], 1.12.5+dfsg-1 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
Open Trace Format support library - development files
ovito (2.3.3+dfsg1-1+b1)
visualization and analysis tool for atomistic simulation data
p4vasp (0.3.29+dfsg-1)
visualization suite for the Vienna Ab-initio Simulation Package (VASP)
paje.app (1.98-1+b2 [amd64, i386, s390x], 1.98-1+b1 [armel, armhf, mips, mipsel, powerpc], 1.98-1 [arm64, ppc64el])
generic visualization tool (Gantt chart and more)
paml (4.8+dfsg-1) [non-free]
Phylogenetic Analysis by Maximum Likelihood (PAML)
paraclu (9-1)
Parametric clustering of genomic and transcriptomic features
parafly (0.0.2013.01.21-2)
parallel command processing using OpenMP
paraview (4.1.0+dfsg+1-2+b1)
Parallel Visualization Application
parsinsert (1.04-1)
Parsimonious Insertion of unclassified sequences into phylogenetic trees
paw (1:2.14.04.dfsg.2-9+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 1:2.14.04.dfsg.2-9 [ppc64el])
Physics Analysis Workstation - a graphical analysis program
paw++ (1:2.14.04.dfsg.2-9+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 1:2.14.04.dfsg.2-9 [ppc64el])
Physics Analysis Workstation (Lesstif-enhanced version)
paw-common (1:2.14.04.dfsg.2-9)
Physics Analysis Workstation (common files)
paw-demos (1:2.14.04.dfsg.2-9)
Physics Analysis Workstation examples and tests
pdb2pqr (2.0.0+dfsg-1)
Preparation of protein structures for electrostatics calculations
pegasus-wms (4.4.0+dfsg-4+b1 [s390x], 4.4.0+dfsg-4 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
Scientific workflow management system for HTCondor
perlprimer (1.1.21-2)
Graphical design of primers for PCR
perm (0.4.0-1)
efficient mapping of short reads with periodic spaced seeds
phylip (1:3.696+dfsg-2)
package of programs for inferring phylogenies
phyml (2:20120412-2)
Phylogenetic estimation using Maximum Likelihood
phyutility (2.7.3-1)
simple analyses or modifications on both phylogenetic trees and data matrices
picard-tools (1.113-1)
Command line tools to manipulate SAM and BAM files
picosat (960-1)
SAT solver with proof and core support
pktools (2.6.4-1)
GDAL add-on tools to perform useful raster processing
planets (0.1.13-14)
Gravitation simulation of planetary bodies
plastimatch (1.6.2+dfsg-1)
medical image reconstruction and registration
plink (1.07-6)
whole-genome association analysis toolset
plink1.9 (1.90~b3b-150117-1)
whole-genome association analysis toolset
poa (2.0+20060928-3)
Partial Order Alignment for multiple sequence alignment
populations (1.2.33+svn0120106-2.1)
population genetic software
pp-popularity-contest (1.0.6-2+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 1.0.6-2 [arm64, ppc64el])
PredictProtein popularity contest
pprepair (0.0~20150323-6284890-1)
planar partition repair tool
praat (5.4.0-1+b1)
program for speech analysis and synthesis
prank (0.0.140110-1)
Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
predictnls (1.0.20-1)
prediction and analysis of protein nuclear localization signals
predictprotein (1.1.07-1)
suite of protein sequence analysis tools
prepair (0.7-2+b1)
polygon repair tool
prepair-data (0.7-2)
polygon repair tool -- example data
prime-phylo (1.0.11-2)
bayesian estimation of gene trees taking the species tree into account
primer3 (2.3.6-1+b1 [amd64, arm64, armel, armhf, i386, mipsel, powerpc, ppc64el, s390x], 2.3.6-1 [mips])
Tool to design flanking oligo nucleotides for DNA amplification
proalign (0.603-1)
Probabilistic multiple alignment program
probabel (0.4.5-1)
Toolset for Genome-Wide Association Analysis
probabel-examples (0.4.5-1)
Example files for ProbABEL
probalign (1.4-3)
multiple sequence alignment using partition function posterior probabilities
probcons (1.12-9)
PROBabilistic CONSistency-based multiple sequence alignment
probcons-extra (1.12-9)
Extra programs from the probcons package
proda (1.0-8+b1)
multiple alignment of protein sequences
prodigal (1:2.6.2-2)
Microbial (bacterial and archaeal) gene finding program
profbval (1.0.22-1)
predictor of flexible/rigid protein residues from sequence
profisis (1.0.11-1)
prediction of protein-protein interaction sites from sequence
profnet-bval (1.0.22-2)
neural network architecture for profbval
profnet-chop (1.0.22-2)
neural network architecture for profchop
profnet-con (1.0.22-2)
neural network architecture for profcon
profnet-isis (1.0.22-2)
neural network architecture for profisis
profnet-md (1.0.22-2)
neural network architecture for metadisorder
profnet-norsnet (1.0.22-2)
neural network architecture for norsnet
profnet-prof (1.0.22-2)
neural network architecture for profacc
profnet-snapfun (1.0.22-2)
neural network architecture for snapfun
profphd (1.0.42-1)
secondary structure and solvent accessibility predictor
profphd-net (1.0.22-2)
neural network architecture for profphd
profphd-utils (1.0.10-1)
profphd helper utilities convert_seq and filter_hssp
proftmb (1.1.12-2)
per-residue prediction of bacterial transmembrane beta barrels
progressivemauve (1.2.0+4713-1)
multiple genome alignment algorithms
proj-bin (4.9.1-2)
Cartographic projection library (tools)
proj-rdnap (2008-4) [non-free]
RDNAP grid correction files for PROJ.4
prooftree (0.12-1+b1 [armhf, mips, mipsel, s390x], 0.12-1 [amd64, arm64, armel, i386, powerpc, ppc64el])
proof-tree visualization for Proof General
psi3 (3.4.0-5)
Quantum Chemical Program Suite
psi4 (4.0~beta5+dfsg-2+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 4.0~beta5+dfsg-2 [arm64, ppc64el])
Quantum Chemical Program Suite
psi4-data (4.0~beta5+dfsg-2)
Quantum Chemical Program Suite (data files)
psychopy (1.82.01.dfsg-1)
environment for creating psychology stimuli in Python
psychtoolbox-3-common (3.0.11.20140816.dfsg1-1)
toolbox for vision research -- arch/interpreter independent part
psychtoolbox-3-lib (3.0.11.20140816.dfsg1-1+b2)
toolbox for vision research -- arch-specific parts
pyfai (0.10.2-1)
Fast Azimuthal Integration scripts
pymca (4.7.4+dfsg-1)
Python applications and toolkit for X-ray fluorescence analysis
pymca-data (4.7.4+dfsg-1)
Architecture independent data files for PyMca
pymol (1.7.2.1-2)
Molecular Graphics System
python-expyriment (0.7.0+git34-g55a4e7e-3)
Python library for cognitive and neuroscientific experiments
python-pyzolib (0.3.3-2)
Utilities for the Pyzo environment (Python 2)
python-shogun (3.2.0-4+b1 [s390x], 3.2.0-4 [amd64, armel, armhf, i386, mips, mipsel, powerpc])
Large Scale Machine Learning Toolbox
python3-pyzolib (0.3.3-2)
Utilities for the Pyzo environment (Python 3)
qfits-tools (6.2.0-8+b1 [s390x], 6.2.0-8 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
FITS manipulation tools
qgis (2.8.2+dfsg-3)
Geographic Information System (GIS)
qgis-api-doc (2.8.2+dfsg-3)
QGIS API documentation
qgis-common (2.8.2+dfsg-3)
QGIS - architecture-independent data
qgis-plugin-globe (2.8.2+dfsg-3)
OSG globe plugin for QGIS
qgis-plugin-globe-common (2.8.2+dfsg-3)
OSG globe plugin for QGIS - architecture-independent data
qgis-plugin-grass (2.8.2+dfsg-3)
GRASS plugin for QGIS
qgis-plugin-grass-common (2.8.2+dfsg-3)
GRASS plugin for QGIS - architecture-independent data
qgis-providers (2.8.2+dfsg-3)
collection of data providers to QGIS
qgis-providers-common (2.8.2+dfsg-3)
collection of data providers to QGIS - architecture-independent files
qgis-server (2.8.2+dfsg-3)
QGIS server providing various OGC services
qiime (1.8.0+dfsg-4+b1 [s390x], 1.8.0+dfsg-4 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
Quantitative Insights Into Microbial Ecology
qiime-data (1.8.0+dfsg-4)
Quantitative Insights Into Microbial Ecology (supporting data)
qmapshack (1.3.0-2)
GPS mapping (GeoTiff and vector) and GPSr management
qmc (0.94-3+b2 [i386, mips, mipsel, powerpc], 0.94-3+b1 [amd64, arm64, armel, armhf, ppc64el, s390x])
Quine McClusky Simplification Tool
qrisk2 (0.0.r31-1)
cardiovascular disease risk calculator
qthid-fcd-controller (4.1-3)
Funcube Dongle controller
qutemol (0.4.1~cvs20081111-3.2)
interactive visualization of macromolecules
raccoon (1.0b-1) [contrib]
preparation of in silico drug screening projects
rasmol (2.7.5.2-2)
Visualize biological macromolecules
raster3d (3.0-3-1)
tools for generating images of proteins or other molecules
rate4site (3.0.0-1)
detector of conserved amino-acid sites
raxml (8.2.0-1)
Randomized Axelerated Maximum Likelihood of phylogenetic trees
ray (2.3.1-1)
de novo genome assemblies of next-gen sequencing data
ray-extra (2.3.1-1)
Scripts and XSL sheets for post-processing for ray
rdkit-data (201503-2)
Collection of cheminformatics and machine-learning software (data files)
rdp-classifier (2.10.2-1)
extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
readseq (1-11)
Conversion between sequence formats
relion-bin (1.3+dfsg-2)
toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+gui (1.3+dfsg-2)
parallel toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+mpi (1.3+dfsg-2)
parallel toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+mpi+gui (1.3+dfsg-2)
parallel toolkit for 3D reconstructions in cryo-electron microscopy
reprof (1.0.1-2)
protein secondary structure and accessibility predictor
rna-star (2.4.0k-1)
ultrafast universal RNA-seq aligner
rnahybrid (2.1.1-2)
Fast and effective prediction of microRNA/target duplexes
rtax (0.984-3)
Classification of sequence reads of 16S ribosomal RNA gene
saga (2.2.0+dfsg-1)
System for Automated Geoscientific Analyses
saint (2.4.0+dfsg-1)
Significance Analysis of INTeractome
salome-kernel (6.5.0-8.1+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 6.5.0-8.1 [arm64, ppc64el])
Numerical simulation pre- and post-processor
samtools (0.1.19-1)
processing sequence alignments in SAM and BAM formats
saods9 (7.3.2+repack-3)
Image display tool for astronomy
saods9-data (7.3.2+repack-3)
Image display tool for astronomy (shared data)
sat4j (2.3.3-1)
Efficient library of SAT solvers in Java
savi (1.4.6-1)
satellite constellation visualisation
sbmltoolbox (4.1.0-1)
libsbml toolbox for octave and matlab
science-astronomy (1.4)
Debian Science Astronomy packages
science-astronomy-dev (1.4)
Debian Science Astronomy-dev packages
science-biology (1.4)
Debian Science Biology packages
science-chemistry (1.4)
Debian Science Chemistry packages
science-config (1.4)
Debian Science Project config package
science-dataacquisition (1.4)
Debian Science data acquisition packages
science-dataacquisition-dev (1.4)
Debian Science data acquisition development packages
science-distributedcomputing (1.4)
Debian Science Distributed Computing packages
science-economics (1.4)
Debian Science Economics packages
science-electronics (1.4)
Debian Science Electronics packages
science-electrophysiology (1.4)
Debian Science packages for Electrophysiology
science-engineering (1.4)
Debian Science Engineering packages
science-engineering-dev (1.4)
Debian Science Engineering-dev packages
science-financial (1.4)
Debian Science financial engineering and computational finance
science-geography (1.4)
Debian Science Geography packages
science-geometry (1.4)
Debian Science geometry packages
science-highenergy-physics (1.4)
Debian Science High Energy Physics packages
science-highenergy-physics-dev (1.4)
Debian Science High Energy Physics development packages
science-imageanalysis (1.4)
Debian Science image analysis packages
science-linguistics (1.4)
Debian Science Linguistics packages
science-logic (1.4)
Debian Science Logic packages
science-machine-learning (1.4)
Debian Science Machine Learning packages
science-mathematics (1.4)
Debian Science Mathematics packages
science-mathematics-dev (1.4)
Debian Science Mathematics-dev packages
science-meteorology (1.4)
Debian Science Meteorology packages
science-meteorology-dev (1.4)
Debian Science Meteorology-dev packages
science-nanoscale-physics (1.4)
Debian Science Nanoscale Physics packages
science-nanoscale-physics-dev (1.4)
Debian Science Nanoscale Physics development packages
science-neuroscience-cognitive (1.4)
Debian Science packages for Cognitive Neuroscience
science-neuroscience-modeling (1.4)
Debian Science packages for modeling of neural systems
science-numericalcomputation (1.4)
Debian Science Numerical Computation packages
science-physics (1.4)
Debian Science Physics packages
science-physics-dev (1.4)
Debian Science Physics-dev packages
science-presentation (1.4)
Debian Science generic tools for presentations
science-psychophysics (1.4)
Debian Science packages for Psychophysics
science-robotics (1.4)
Debian Robotics packages
science-robotics-dev (1.4)
Debian Robotics development packages
science-simulations (1.4)
Debian Science Simulation packages
science-social (1.4)
Debian Science social sciences packages
science-statistics (1.4)
Debian Science Statistics packages
science-tasks (1.4)
Debian Science tasks for tasksel
science-typesetting (1.4)
Debian Science typesetting packages
science-viewing (1.4)
Debian Science data visualisation packages
science-viewing-dev (1.4)
Debian Science development of visualisation applications
scythe (0.994-1)
Bayesian adaptor trimmer for sequencing reads
sdrangelove (0.0.1.20140824-1)
Osmocom Software Defined Radio
seaview (1:4.5.4.5-1)
Multiplatform interface for sequence alignment and phylogeny
seq-gen (1.3.3-1) [non-free]
simulate the evolution of nucleotide or amino acid sequences
seqan-apps (1.4.1+dfsg-2)
C++ library for the analysis of biological sequences
seqtk (1.0-1)
Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
sextractor (2.19.5+dfsg-3)
Source extractor for astronomical images
sfcgal-bin (1.1.0-2)
Simple viewer for SFCGAL library
shelxle (1.0.720-2)
graphical user interface for SHELXL
shogun-cmdline-static (3.2.0-7.3)
Large Scale Machine Learning Toolbox
sibsim4 (0.20-2)
align expressed RNA sequences on a DNA template
sickle (1.33-1)
windowed adaptive trimming tool for FASTQ files using quality
sift (4.0.3b-4) [non-free]
predicts if a substitution in a protein has a phenotypic effect
sigma-align (1.1.3-3)
Simple greedy multiple alignment of non-coding DNA sequences
sigviewer (0.5.1+svn556-4)
GUI viewer for biosignals such as EEG, EMG, and ECG
sim4 (0.0.20121010-1)
tool for aligning cDNA and genomic DNA
simgrid-java (3.11.1-10)
Java bindings for the SimGrid Toolkit
siril (0.9.0~rc1-1+b1)
astronomical image processing tool
skycat (3.1.2+starlink1~b-9)
Image visualization and access to catalogs and data for astronomy
slang-xfig (0.2.0~.35-1.1)
produce plots and drawings through Xfig's fig2dev in S-Lang
smalt (0.7.6-4)
Sequence Mapping and Alignment Tool
smalt-examples (0.7.6-4)
Sequence Mapping and Alignment Tool (examples)
snap (2013-11-29-1)
location of genes from DNA sequence with hidden markov model
snaphu (1.4.2-2) [non-free]
Statistical-Cost, Network-Flow Algorithm for 2D Phase Unwrapping
snp-sites (2.0.1-1)
Binary code for the package snp-sites
soapdenovo (1.05-2)
short-read assembly method to build de novo draft assembly
soapdenovo2 (240+dfsg-2)
short-read assembly method to build de novo draft assembly
spass (3.7-3)
An automated theorem prover for first-order logic with equality
spatialite-bin (4.3.0-1)
Geospatial extension for SQLite - tools
spd (1.3.0-1)
Synchrotron image corrections and azimuthal integration
splash (2.5.1-1)
Visualisation tool for Smoothed Particle Hydrodynamics simulation
spread-phy (1.0.7+dfsg-1)
analyze and visualize phylogeographic reconstructions
squizz (0.99b+dfsg-3)
Converter for genetic sequences and alignments
sra-toolkit (2.3.5-2+dfsg-1)
utilities for the NCBI Sequence Read Archive
sra-toolkit-libs-dev (2.3.5-2+dfsg-1)
Development files for the NCBI SRA Toolkit's libraries
sra-toolkit-libs0 (2.3.5-2+dfsg-1)
Libraries for the SRA Toolkit
ssake (3.8.3-1)
genomics application for assembling millions of very short DNA sequences
ssake-examples (3.8.3-1)
example data for SSAKE, a genomic assembler of short reads
staden (2.0.0+b10-1.1+b1 [s390x], 2.0.0+b10-1.1 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
DNA sequence assembly (Gap4/Gap5), editing and analysis tools
staden-common (2.0.0+b10-1.1)
Architecture independent files for Staden
staden-io-lib-examples (1.14.0-1)
programs for maniuplating DNA sequencing files (usage examples)
staden-io-lib-utils (1.14.0-1)
programs for maniuplating DNA sequencing files
stardata-common (0.8)
Common framework to manage astronomy packages
starplot (0.95.5-8.1)
3-dimensional perspective star map viewer
starpu-contrib-examples (1.1.4+dfsg-1) [contrib]
Task scheduler for heterogeneous multicore machines - exs
starpu-examples (1.1.4+dfsg-1+b1)
Task scheduler for heterogeneous multicore machines - exs
starpu-examples
virtual package provided by starpu-contrib-examples
stellarium (0.13.3-2)
real-time photo-realistic sky generator
stellarium-data (0.13.3-2)
Stellarium data files
step (4:4.14.2-1)
interactive physical simulator for KDE
stiff (2.4.0-2)
convert scientific FITS images to the TIFF format
stimfit (0.13.19-1)
Program for viewing and analyzing electrophysiological data
subread (1.4.6-p4+dfsg-1)
toolkit for processing next-gen sequencing data
subread-data (1.4.6-p4+dfsg-1)
data files for subread package
sumatra (1.0.10-1)
fast and exact comparison and clustering of sequences
sumo (0.23.0+dfsg1-2)
Simulation of Urban MObility (SUMO)
survex (1.2.20-2+b1)
cave surveying and mapping software
survex-aven (1.2.20-2+b1)
sophisticated cave survey viewer for Survex
swarm (2.1.1-1)
robust and fast clustering method for amplicon-based studies
swarp (2.38.0+dfsg-2)
Resample and co-add together FITS images
swarp
virtual package provided by suckless-tools
swe-basic-data (1.80.00.0002-1)
basic data files for the libswe package
swe-standard-data (00004-1)
standard data for the Swiss Ephemeris
syrthes (4.3.0-dfsg1-1)
Transient thermal simulations in complex solid geometries
syrthes-gui (4.3.0-dfsg1-1)
Transient thermal simulations in complex solid geometries - GUI
syrthes-tests (4.3.0-dfsg1-1)
Test cases for SYRTHES
syrthes-tools (4.3.0-dfsg1-1)
Transient thermal simulations in complex solid geometries - tools
t-coffee (11.00.8cbe486-1+b1)
Multiple Sequence Alignment
t-coffee-examples (11.00.8cbe486-1)
annotated examples for the use of T-Coffee
tabix (1.2.1-1 [amd64, arm64, armel, i386, mipsel, ppc64el], 0.2.6-2 [armhf, mips, powerpc, s390x])
generic indexer for TAB-delimited genome position files
tandem-mass (1:2013.09.01-2)
mass spectrometry software for protein identification
tcd-utils (20061127-2)
convert Tide Constituent Database (TCD) files
terraintool (1.12a-1)
Generates survex format terrain models from SRTM and ASTER data
tessa (0.3.1-6.1+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 0.3.1-6.1 [arm64, ppc64el])
simulation of 3D optical systems with the FDTD method
tessa-mpi (0.3.1-6.1+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 0.3.1-6.1 [arm64, ppc64el])
simulation of 3D optical systems using FDTD on MPI clusters
therion (5.3.16-7)
Cave surveying - 2D and 3D drawing software
therion-viewer (5.3.16-7)
Cave surveying - 3D viewer for therion models
theseus (3.3.0-3)
superimpose macromolecules using maximum likelihood
theseus-examples (3.3.0-3)
superimpose macromolecules using maximum likelihood (examples)
tigr-glimmer (3.02-3)
Gene detection in archea and bacteria
timbl (6.4.6-1)
Tilburg Memory Based Learner
tm-align (20140601+dfsg-1+b1 [s390x], 20140601+dfsg-1 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
structual alignment of proteins
tophat (2.1.0+dfsg-1)
fast splice junction mapper for RNA-Seq reads
toppred (1.10-1)
transmembrane topology prediction
transcalc (0.14-5)
microwave and RF transmission line calculator
transdecoder (2.0.1+dfsg-1)
find coding regions within transcripts
transtermhp (2.09-2)
find rho-independent transcription terminators in bacterial genomes
travis (150205-1+b1)
trajectory analyzer and visualizer
tree-ppuzzle (5.2-7+b1 [amd64, armel, armhf, i386, powerpc], 5.2-7 [mips, mipsel, ppc64el])
Parallelized reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle (5.2-7+b1 [amd64, armel, armhf, i386, powerpc], 5.2-7 [mips, mipsel, ppc64el])
Reconstruction of phylogenetic trees by maximum likelihood
treeview (1.1.6.4+dfsg-1) [contrib]
Java re-implementation of Michael Eisen's TreeView
treeviewx (0.5.1+20100823-3+b1 [s390x], 0.5.1+20100823-3 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
Displays and prints phylogenetic trees
triangle-bin (1.6-2) [non-free]
High-quality 2-D mesh generator binary programs
trimmomatic (0.33+dfsg-1)
flexible read trimming tool for Illumina NGS data
tunnelx (20140102-2)
Cave Survey drawing software
twms (0.05t-2)
tiny web map service
uc-echo (1.12-9)
error correction algorithm designed for short-reads from NGS
ucto (0.5.3-3.1+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 0.5.3-3.1 [arm64, ppc64el])
Unicode Tokenizer
uhd-host (3.7.3-1)
universal hardware driver for Ettus Research products
units-filter (3.7-1)
Parser for expressions concerning physical values
utopia-documents (2.4.4-2)
PDF reader that displays interactive annotations on scientific articles.
v-sim (3.7.2-1)
Visualize atomic structures
v-sim-common (3.7.2-1)
Visualize atomic structures (support files)
v-sim-plugins (3.7.2-1)
Plugins for V_Sim (a 3D visualization package)
varscan (2.3.9+dfsg-1) [non-free]
variant detection in next-generation sequencing data
vcftools (0.1.12+dfsg-1)
Collection of tools to work with VCF files
velvet (1.2.10+dfsg1-2)
Nucleic acid sequence assembler for very short reads
velvet-example (1.2.10+dfsg1-2)
Example data for the Velvet sequence assembler
velvet-long (1.2.10+dfsg1-2)
Nucleic acid sequence assembler for very short reads, long version
velvet-tests (1.2.10+dfsg1-2)
Test data for the Velvet sequence assembler
velvetoptimiser (2.2.5-2)
automatically optimise Velvet do novo assembly parameters
veusz (1.21.1-1)
2D scientific plotting application with graphical interface
veusz-helpers (1.21.1-1)
Architecture-specific helper module for Veusz
viewmol (2.4.1-23)
A graphical front end for computational chemistry programs.
visp-images-data (2.10.0-1)
visual servoing library - reference files
vistrails (2.1.1-1)
Science visualisation workflow toolkit
vmtk (1.0.1-3) [non-free]
the Vascular Modeling Toolkit
votca-csg (1.2.4-1)
VOTCA's coarse-graining engine
votca-csg-scripts (1.2.4-1)
VOTCA's coarse-graining scripts
votca-csg-tutorials (1.2.4-1)
VOTCA's coarse-graining tutorials
vowpal-wabbit (7.3-1.1+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 7.3-1.1 [arm64, ppc64el])
fast and scalable online machine learning algorithm
voxbo (1.8.5~svn1246-1.1+b1 [s390x], 1.8.5~svn1246-1.1 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el])
processing, statistical analysis, and display of brain imaging data
vsearch (1.1.3+dfsg-1)
tool for processing metagenomic sequences
vsearch-data (1.1.3+dfsg-1)
example data for vsearch tool for processing metagenomic sequences
wcslib-tools (4.24-1)
Command line tools utilizing wcslib
wcstools (3.9.2-4)
Handle the WCS of a FITS image
weightwatcher (1.12-1)
Combine maps and polygon data for astronomical image processing
weka (3.6.12-2)
Machine learning algorithms for data mining tasks
wfrog (0.8.2+svn973-1)
Web-based customizable weather station software
wigeon (20101212+dfsg-1)
reimplementation of the Pintail 16S DNA anomaly detection utility
wise (2.4.1-17)
comparison of biopolymers, like DNA and protein sequences
wxastrocapture (1.8.1+git20140821+dfsg-1)
Windows linuX Astronomy Capture
xbs (0-10)
3-d models and movies of molecules
xcrysden (1.5.60-1)
Crystalline and Molecular Structure Visualizer
xcrysden-data (1.5.60-1)
Crystalline and Molecular Structure Visualizer (Data Files)
xdrawchem (2.0-3)
Chemical structures and reactions editor
xflr5 (6.09.06-2)
analysis tool for airfoils
xfoil (6.99.dfsg-2)
program for the design and analysis of subsonic airfoils
xmakemol (5.16-7)
program for visualizing atomic and molecular systems
xmakemol-gl (5.16-7)
program for visualizing atomic and molecular systems (OpenGL)
xmds (1.6.6-7)
eXtensible Multi-Dimensional Simulator
xmds2 (2.2.2+dfsg-1)
eXtensible Multi-Dimensional Simulator
xpa-tools (2.1.15-5)
Tools for seamless communication between Unix programs
xplot (1.19-9+b1 [powerpc], 1.19-9 [amd64, arm64, armel, armhf, i386, mips, mipsel, ppc64el, s390x])
simple on-screen x-y column data plotter
xplot-xplot.org (0.90.7.1-2)
fast tool to graph and visualize lots of data
xppaut (6.11b+1.dfsg-1)
Phase Plane Plus Auto: Solves many kinds of equations
xtide (2.13.2-1+b1)
provides tide and current predictions
xtide-coastline (20020202-1)
coastline data for xtide
xtide-data (20100529-1)
Harmonics data for xtide
xtide-data-nonfree (20100529-1) [non-free]
Harmonics data for xtide (Canada, Netherlands, Germany and UK)
xyscan (3.33-1)
data thief for scientists
yagv (0.4~20130422.r5bd15ed+dfsg-1)
yet another G-code viewer
yale (5.0.95-2) [non-free]
stellar data set from the Yale Bright Star Catalog
yorick (2.2.04+dfsg1-3)
interpreted language and scientific graphics
yorick-av (0.0.3-3+b2 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 0.0.3-3+b1 [arm64, ppc64el])
write movies from Yorick in various formats
yorick-cubeview (2.2-2)
3D FITS data viewer specialized in spectro-imaging
yorick-curses (0.1-6)
interface to the (n)curses library for the Yorick language
yorick-data (2.2.04+dfsg1-3)
interpreted library for the Yorick language
yorick-dev (2.2.04+dfsg1-3)
development files for the Yorick interpreted language
yorick-full (2.2.04+dfsg1-3)
full installation of the Yorick interpreter and add-ons
yorick-gl (1.1+cvs20070922+dfsg-6.1)
OpenGL 3D graphics support for the Yorick language
yorick-gy (0.0.5-1)
GObject introspection and Gtk bindings for Yorick
yorick-gyoto (1.0.2-1)
General relativistic geodesic integration for the Yorick language
yorick-hdf5 (0.8.0-5+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 0.8.0-5 [arm64, ppc64el])
Hierarchical Data Format 5 interface for the Yorick language
yorick-imutil (0.5.7-3)
fast image manipulation routines for the Yorick language
yorick-mira (0.9.10+dfsg-1)
optical interferometry image reconstruction within Yorick
yorick-ml4 (0.6.0-3)
Matlab file format support for the Yorick language
yorick-mpeg (0.1-3)
MPEG output support for the Yorick language
yorick-mpy-common (2.2.04+dfsg1-3)
Message Passing Yorick (common files)
yorick-mpy-mpich2 (2.2.04+dfsg1-3)
Message Passing Yorick (MPICH2 build)
yorick-mpy-openmpi (2.2.04+dfsg1-3)
Message Passing Yorick (OpenMPI build)
yorick-optimpack (1.3.2+dfsg-1)
optimization of large scale problems for the Yorick language
yorick-soy (1.4.0-3)
sparse matrix operations for the Yorick language
yorick-spydr (0.8.2-3)
FITS image display and simple analysis
yorick-svipc (0.16-2)
interprocess communication (shared memory...) for Yorick
yorick-yao (5.4.0-1)
Yorick-based adaptive optics system simulator
yorick-yeti (6.3.3-2)
utility plugin for the Yorick language
yorick-yeti-fftw (6.3.3-2)
FFT plugin for the Yorick language
yorick-yeti-gsl (6.3.3-2)
dummy transitional package
yorick-yeti-gsl
virtual package provided by yorick-ygsl
yorick-yeti-regex (6.3.3-2)
POSIX regular expressions for the Yorick language
yorick-yeti-tiff (6.3.3-2)
TIFF image format input for the Yorick language
yorick-ygsl (1.2.0-1)
GSL special functions plugin for the Yorick language
yorick-ynfft (1.0.2-2)
nonequispaced fast Fourier transform for Yorick
yorick-yutils (1.5.2-1)
various utilities for the Yorick language
yorick-z (1.2.0+cvs20080115-5+b1)
zlib, jpeg and png support for the Yorick language
z3 (4.4.0-2)
theorem prover from Microsoft Research
z88 (13.0.0+dfsg2-3)
Finite Element Analysis Program - runtime
z88-data (13.0.0+dfsg2-3)
Finite Element Analysis Program - data
zalign (0.9.1-1+b1 [amd64, armel, armhf, i386, powerpc], 0.9.1-1 [arm64, mips, mipsel, ppc64el])
parallel local alignment of biological sequences
zegrapher (2.0-4)
plotting mathematical functions and sequences on the plane
zimpl (3.3.2-1)
mathematical modeling language for optimization problems
ztex-bmp (20120314-2)
universal macro processor