Package: disulfinder (1.2.11-12)

[ Source: disulfinder  ]

cysteines disulfide bonding state and connectivity predictor

'disulfinder' is for predicting the disulfide bonding state of cysteines and their disulfide connectivity starting from sequence alone. Disulfide bridges play a major role in the stabilization of the folding process for several proteins. Prediction of disulfide bridges from sequence alone is therefore useful for the study of structural and functional properties of specific proteins. In addition, knowledge about the disulfide bonding state of cysteines may help the experimental structure determination process and may be useful in other genomic annotation tasks.

'disulfinder' predicts disulfide patterns in two computational stages: (1) the disulfide bonding state of each cysteine is predicted by a BRNN-SVM binary classifier; (2) cysteines that are known to participate in the formation of bridges are paired by a Recursive Neural Network to obtain a connectivity pattern.

Tags: Role: Program

Other Packages Related to disulfinder

• dep: disulfinder-data

  data files for predictor of disulfide bonds in proteins

• dep: libc6 (>= 2.33)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0) [not armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

Download disulfinder

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	233.3 kB	676.0 kB	[list of files]
arm64	200.7 kB	588.0 kB	[list of files]
armel	185.2 kB	567.0 kB	[list of files]
armhf	190.6 kB	411.0 kB	[list of files]
i386	242.0 kB	707.0 kB	[list of files]
mips64el	203.5 kB	744.0 kB	[list of files]
ppc64el	236.6 kB	764.0 kB	[list of files]
s390x	203.5 kB	676.0 kB	[list of files]