Package: bitseq (0.7.5+dfsg-6)

[ Source: bitseq  ]

Bayesian Inference of Transcripts from Sequencing Data

BitSeq is an application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions. An advantage of this approach is the ability to account for both technical uncertainty and intrinsic biological variance in order to avoid false DE calls. The technical contribution to the uncertainty comes both from finite read-depth and the possibly ambiguous mapping of reads to multiple transcripts.

Other Packages Related to bitseq

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64, i386, s390x]

  GCC support library

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [arm64, mips64el]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-numpy

  Fast array facility to the Python 3 language

• dep: zlib1g (>= 1:1.2.3.3)

  compression library - runtime

• sug: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

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Architecture	Package Size	Installed Size	Files
amd64	337.2 kB	1,927.0 kB	[list of files]
arm64	298.0 kB	1,691.0 kB	[list of files]
armel	282.4 kB	1,606.0 kB	[list of files]
armhf	286.8 kB	1,158.0 kB	[list of files]
i386	362.5 kB	2,022.0 kB	[list of files]
mips64el	320.9 kB	2,167.0 kB	[list of files]
ppc64el	343.5 kB	2,471.0 kB	[list of files]
s390x	297.6 kB	1,955.0 kB	[list of files]