Package: bali-phy (3.6.1+dfsg-2)

[ Source: bali-phy  ]

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

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• dep: libboost-chrono1.83.0 (>= 1.83.0)

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• dep: libboost-filesystem1.83.0 (>= 1.83.0)

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• dep: libboost-program-options1.83.0 (>= 1.83.0)

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• dep: libboost-random1.83.0 (>= 1.83.0)

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• dep: libc6 (>= 2.34)

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• dep: libcairo2 (>= 1.4.10)

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• dep: libgcc-s1 (>= 3.0) [ppc64el, s390x]

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  dep: libgcc-s1 (>= 3.4) [amd64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el]

• dep: libstdc++6 (>= 13.1)

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• dep: perl

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• rec: gnuplot

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Architecture	Package Size	Installed Size	Files
amd64	6,383.3 kB	37,531.0 kB	[list of files]
arm64	5,730.1 kB	35,383.0 kB	[list of files]
armel	4,896.1 kB	31,409.0 kB	[list of files]
armhf	4,485.6 kB	23,017.0 kB	[list of files]
i386	6,161.9 kB	36,229.0 kB	[list of files]
mips64el	5,716.2 kB	43,527.0 kB	[list of files]
ppc64el	6,243.7 kB	41,281.0 kB	[list of files]
s390x	5,015.8 kB	35,059.0 kB	[list of files]