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[ Källkod: maq  ]

Paket: maq (0.7.1-5)

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maps short fixed-length polymorphic DNA sequence reads to reference sequences

Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2.

Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.

Märken: Biologi: biology::nuceleic-acids, Field: Biologi, field::biology:bioinformatics, implemented-in::c++, Implemented in: Perl, User Interface: interface::commandline, role::program, Scope: Utility, Purpose: Behöver ett märke till, use::analysing, use::comparing, Searching, Supports Format: works-with-format::TODO, works-with-format::plaintext, Works with: Behöver ett märke till

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