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[ Källkod: t-coffee  ]

Paket: t-coffee (11.00.8cbe486-5)

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Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

Märken: Field: Biologi, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Behöver ett märke till, works-with-format::plaintext, works-with::TODO

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Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
amd64 1.872,9 kbyte3.683,0 kbyte [filförteckning]
arm64 1.752,5 kbyte3.559,0 kbyte [filförteckning]
armel 1.713,4 kbyte3.506,0 kbyte [filförteckning]
armhf 1.730,3 kbyte2.902,0 kbyte [filförteckning]
i386 1.874,0 kbyte3.974,0 kbyte [filförteckning]
mips 1.799,8 kbyte4.142,0 kbyte [filförteckning]
mips64el 1.815,9 kbyte4.227,0 kbyte [filförteckning]
mipsel 1.811,7 kbyte4.142,0 kbyte [filförteckning]
ppc64el 1.843,8 kbyte4.139,0 kbyte [filförteckning]
s390x 1.764,5 kbyte3.863,0 kbyte [filförteckning]