alla flaggor
stretch  ] [  buster  ] [  bullseye  ] [  bookworm  ] [  sid  ]
[ Källkod: barrnap  ]

Paket: barrnap (0.7+dfsg-2)

Länkar för barrnap

Screenshot

Debianresurser:

Hämta källkodspaketet barrnap:

Ansvariga:

Externa resurser:

Liknande paket:

rapid ribosomal RNA prediction

Barrnap (BAsic Rapid Ribosomal RNA Predictor) predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).

It takes FASTA DNA sequence as input, and writes GFF3 as output. It uses the NHMMER tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style. Multithreading is supported and one can expect roughly linear speed-ups with more CPUs.

Märken: Field: Biologi, Bioinformatics, Implemented in: implemented-in::perl, interface::commandline, Role: Program, Purpose: use::searching, works-with::biological-sequence

Andra paket besläktade med barrnap

  • beror
  • rekommenderar
  • föreslår
  • enhances

Hämta barrnap

Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
all 187,7 kbyte1.515,0 kbyte [filförteckning]