Källkodspaket: snippy (4.6.0+dfsg-6)
Länkar för snippy
Debianresurser:
Ansvariga:
Externa resurser:
Följande binärpaket byggs från detta källkodspaket:
- snippy
- rapid haploid variant calling and core genome alignment
- snippy-examples
- rapid haploid variant calling and core genome alignment (examples)
Andra paket besläktade med snippy
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- arkitekturoberoende bygg-beroende
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- adep:
debhelper-compat
(= 13)
- Paketet inte tillgängligt
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- adep:
any2fasta
- convert various sequence formats to FASTA
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- adep:
bcftools
- genomic variant calling and manipulation of VCF/BCF files
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- adep:
bedtools
- suite of utilities for comparing genomic features
-
- adep:
bwa
- Burrows-Wheeler Aligner
-
- adep:
freebayes
- Bayesian haplotype-based polymorphism discovery and genotyping
-
- adep:
libbio-perl-perl
- BioPerl core perl modules
-
- adep:
libvcflib-tools
- C++ library for parsing and manipulating VCF files (tools)
-
- adep:
minimap2
- versatile pairwise aligner for genomic and spliced nucleotide sequences
-
- adep:
parallel
- build and execute command lines from standard input in parallel
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- adep:
samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- adep:
samclip
- filter SAM file for soft and hard clipped alignments
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- adep:
seqtk
- Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
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- adep:
snp-sites
- Binary code for the package snp-sites
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- adep:
snpeff
- genetic variant annotation and effect prediction toolbox - tool
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- adep:
vt
- toolset for short variant discovery in genetic sequence data
