Paket: skesa (2.4.0-6 och andra)

[ Källkod: skesa  ]

strategic Kmer extension for scrupulous assemblies

SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast, and produces an identical assembly for the same input when assembled multiple times with the same or different compute resources. SKESA has been used for assembling over 272,000 read sets in the Sequence Read Archive at NCBI and for real-time pathogen detection.

Andra paket besläktade med skesa

• dep: libboost-iostreams1.83.0 (>= 1.83.0) [ej x32]

  Boost.Iostreams Library

• dep: libboost-program-options1.83.0 (>= 1.83.0) [ej x32]

  program options library for C++

• dep: libboost-timer1.83.0 (>= 1.83.0) [ej x32]

  C++ wall clock and CPU process timers

• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC stödbibliotek

• dep: libncbi-vdb2 (>= 2.11.2+dfsg) [x32]

  Paketet inte tillgängligt

• dep: libncbi-vdb3 (>= 3.0.2+dfsg) [ej x32]

  libraries for using data in the INSDC Sequence Read Archives

• dep: libngs-c++3 (>= 3.0.3+dfsg) [ej x32]

  Next Generation Sequencing language Bindings (C++ runtime)

• dep: libstdc++6 (>= 12.2.0-9) [x32]

  GNU standardbibliotek v3 för C++

  dep: libstdc++6 (>= 13.1) [ej x32]

• dep: zlib1g (>= 1:1.1.4) [x32]

  Kompressionsbibliotek - körtidspaket

Hämta skesa

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	2.4.0-6+b2	558,0 kbyte	2.350,0 kbyte	[filförteckning]
arm64	2.4.0-6+b2	495,0 kbyte	2.294,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	2.4.0-4	631,9 kbyte	2.448,0 kbyte	[filförteckning]