Paket: seqprep (1.3.2-9)

[ Källkod: seqprep  ]

stripping adaptors and/or merging paired reads of DNA sequences with overlap

SeqPrep is a program to merge paired end Illumina reads that are overlapping into a single longer read. It may also just be used for its adapter trimming feature without doing any paired end overlap. When an adapter sequence is present, that means that the two reads must overlap (in most cases) so they are forcefully merged. When reads do not have adapter sequence they must be treated with care when doing the merging, so a much more specific approach is taken. The default parameters were chosen with specificity in mind, so that they could be ran on libraries where very few reads are expected to overlap. It is always safest though to save the overlapping procedure for libraries where you have some prior knowledge that a significant portion of the reads will have some overlap.

Andra paket besläktade med seqprep

• dep: libc6 (>= 2.34) [ej alpha, ia64, sh4]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: zlib1g (>= 1:1.1.4) [ej armel, armhf, hppa, m68k, sh4]

  Kompressionsbibliotek - körtidspaket

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, hppa, m68k, sh4]

Hämta seqprep

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	26,7 kbyte	167,0 kbyte	[filförteckning]
amd64	27,5 kbyte	99,0 kbyte	[filförteckning]
arm64	26,2 kbyte	103,0 kbyte	[filförteckning]
armel	28,0 kbyte	110,0 kbyte	[filförteckning]
armhf	26,6 kbyte	82,0 kbyte	[filförteckning]
hppa (inofficiell anpassning)	28,4 kbyte	131,0 kbyte	[filförteckning]
i386	27,3 kbyte	90,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	33,7 kbyte	185,0 kbyte	[filförteckning]
m68k (inofficiell anpassning)	26,2 kbyte	94,0 kbyte	[filförteckning]
mips64el	26,7 kbyte	169,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	26,4 kbyte	167,0 kbyte	[filförteckning]
ppc64el	26,4 kbyte	103,0 kbyte	[filförteckning]
riscv64	28,1 kbyte	99,0 kbyte	[filförteckning]
s390x	26,6 kbyte	103,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	32,4 kbyte	102,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	26,3 kbyte	1.064,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	27,5 kbyte	98,0 kbyte	[filförteckning]