Paket: khmer (3.0.0~a3+dfsg-8 och andra)

[ Källkod: khmer  ]

in-memory DNA sequence kmer counting, filtering & graph traversal

khmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name.

Märken: Biologi: Fasta/Pearson, Nucleic Acids, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c++, implemented-in::python, User Interface: Command Line, Role: role::program, use::analysing, Purpose: Comparing, Filtering

Andra paket besläktade med khmer

• dep: cython3 (>= 0.26.1) [ia64]

  C-Extensions for Python 3

• dep: khmer-common

  common files for the khmer project tools

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.32) [amd64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.4) [sparc64]

• dep: libc6.1 (>= 2.31) [ia64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6.1-udeb

• dep: libgcc-s1 (>= 3.4) [amd64]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc1 (>= 1:3.4) [sparc64]

  Paketet inte tillgängligt

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 13.1) [amd64]

  GNU standardbibliotek v3 för C++

  dep: libstdc++6 (>= 5.2) [ej amd64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: python3 [ej sparc64]

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.10) [ia64]

  dep: python3 (<< 3.13) [amd64]

  dep: python3 (<< 3.6) [sparc64]

  dep: python3 (>= 3.11~) [amd64]

  dep: python3 (>= 3.4~) [sparc64]

  dep: python3 (>= 3.9~) [ia64]

• dep: python3-bz2file [ej amd64]

  Paketet inte tillgängligt

• dep: python3-screed [amd64]

  short nucleotide read sequence utils in Python 3

  dep: python3-screed (<< 1.0) [sparc64]

  dep: python3-screed (>= 1.0) [ia64]

• dep: zlib1g (>= 1:1.2.3.4)

  Kompressionsbibliotek - körtidspaket

Hämta khmer

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	3.0.0~a3+dfsg-8	8.057,0 kbyte	51.019,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	2.1.2+dfsg-9	6.427,6 kbyte	33.935,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	2.0+dfsg-5	5.855,3 kbyte	23.661,0 kbyte	[filförteckning]