Paket: r-bioc-megadepth (1.12.0+ds-2)

[ Källkod: r-bioc-megadepth  ]

BioCOnductor BigWig and BAM related utilities

This package provides an R interface to Megadepth by Christopher Wilks available at https://github.com/ChristopherWilks/megadepth. It is particularly useful for computing the coverage of a set of genomic regions across bigWig or BAM files. With this package, you can build base-pair coverage matrices for regions or annotations of your choice from BigWig files. Megadepth was used to create the raw files provided by https://bioconductor.org/packages/recount3.

Andra paket besläktade med r-bioc-megadepth

• dep: megadepth

  computes coverage from BigWig and BAM sequencing files

• dep: r-api-4.0

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• dep: r-api-bioc-3.18

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• dep: r-bioc-genomicranges

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• dep: r-cran-readr

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• dep: r-cran-xfun

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• sug: r-bioc-biocstyle

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• sug: r-bioc-genomeinfodb

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• sug: r-bioc-rtracklayer

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• sug: r-cran-covr

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• sug: r-cran-knitr

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• sug: r-cran-rmarkdown

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• sug: r-cran-sessioninfo

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• sug: r-cran-testthat

  GNU R testsuite

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