Paket: python3-nanomath (1.2.1+ds-1)

[ Källkod: python-nanomath  ]

simple math function for other Oxford Nanopore processing scripts

This Python3 module provides a few simple math and statistics functions for other scripts processing Oxford Nanopore sequencing data.

 * Calculate read N50 from a set of lengths get_N50(readlenghts)
 * Remove extreme length outliers from a dataset
   remove_length_outliers(dataframe, columname)
 * Calculate the average Phred quality of a read ave_qual(qualscores)
 * Write out the statistics report after calling readstats function
   write_stats(dataframe, outputname)
 * Compute a number of statistics, return a dictionary
   calc_read_stats(dataframe)

Andra paket besläktade med python3-nanomath

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-deprecated

  Python decorator for old classes, functions or methods

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-pandas

  data structures for "relational" or "labeled" data

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