Paket: python-cogent (1.9-14 och andra) [debports]

Länkar för python-cogent

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Externa resurser:

Hemsida [pycogent.org]

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framework for genomic biology

PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for:

 * controlling third-party applications,
 * devising workflows; querying databases,
 * conducting novel probabilistic analyses of biological sequence
   evolution, and
 * generating publication quality graphics.

It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data.

Paket som tillhandahåller python-cogent

python3-cogent3: framework for genomic biology

Andra paket besläktade med python-cogent

beror

rekommenderar

föreslår

enhances

dep: libc6 (>= 2.28) [sh4]

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb

dep: libc6 (>= 2.3.4) [hppa]

dep: libc6 (>= 2.4) [sparc64]
dep: python

Paketet inte tillgängligt

dep: python (<< 2.8)

dep: python (>= 2.7~)
dep: python-matplotlib

Paketet inte tillgängligt
dep: python-numpy (>= 1:1.13.1) [hppa]

Paketet inte tillgängligt

dep: python-numpy (>= 1:1.14.3) [ej hppa]
dep: python-numpy-abi9

Paketet inte tillgängligt

rec: blast2

Paketet inte tillgängligt
rec: cd-hit

suite of programs designed to quickly group sequences
rec: clearcut

extremely efficient phylogenetic tree reconstruction
rec: dialign

Segment-based multiple sequence alignment
rec: muscle

Multiple alignment program of protein sequences

sug: cdbfasta

Constant DataBase indexing and retrieval tools for multi-FASTA files
sug: clustalw

global multiple nucleotide or peptide sequence alignment
sug: fasttree

phylogenetic trees from alignments of nucleotide or protein sequences
sug: mafft

Multiple alignment program for amino acid or nucleotide sequences
sug: mothur

sequence analysis suite for research on microbiota
sug: parsinsert

Parsimonious Insertion of unclassified sequences into phylogenetic trees
sug: python-cogent-doc

docs for python3-cogent3
sug: rdp-classifier

extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
sug: rtax

Classification of sequence reads of 16S ribosomal RNA gene

Hämta python-cogent

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
hppa (inofficiell anpassning)	1.9-11+b1	2.388,2 kbyte	7.890,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	1.9-14	2.420,6 kbyte	7.527,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	1.9-14	2.357,1 kbyte	7.877,0 kbyte	[filförteckning]