Paket: libjellyfish-2.0-2 (2.3.1-3 och andra)

[ Källkod: jellyfish  ]

count k-mers in DNA sequences (dynamic library of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the dynamic library the main executable of jellyfish is linked to.

Märken: Role: Shared Library

Andra paket besläktade med libjellyfish-2.0-2

• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC stödbibliotek

• dep: libstdc++6 (>= 13.1)

  GNU standardbibliotek v3 för C++

Hämta libjellyfish-2.0-2

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
ppc64el	2.3.1-3+b4	69,6 kbyte	285,0 kbyte	[filförteckning]