Paket: pbbamtools (2.4.0+dfsg-1 och andra)

[ Källkod: pbbam  ]

processing Pacific Biosciences binary alignment/map files

The BAM format is a binary, compressed, record-oriented container format for raw or aligned sequence reads. The associated SAM format is a text representation of the same data. The specifications for BAM/SAM are maintained by the SAM/BAM Format Specification Working Group.

PacBio-produced BAM files are fully compatible with the BAM specification, but makes use of the extensibility mechanisms of the BAM specification to encode PacBio-specific information.

This package provides command-line utilities for working with PacBio BAM files.

Andra paket besläktade med pbbamtools

• dep: libc6 (>= 2.31) [sh4]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.34) [ej alpha, ia64, m68k, sh4]

  dep: libc6 (>= 2.4) [m68k]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [ej ia64, m68k, sh4]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.3.4) [sh4]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC stödbibliotek

• dep: libhts3 (>= 1.10) [m68k, sh4]

  C library for high-throughput sequencing data formats

• dep: libhts3t64 (>= 1.17) [ej m68k, sh4]

  C library for high-throughput sequencing data formats

• dep: libpbbam1.3.0 (= 1.3.0+dfsg-2) [m68k, sh4]

  Pacific Biosciences binary alignment/map (BAM) library

• dep: libpbbam2.4.0 (= 2.4.0+dfsg-1+b3) [ej m68k, sh4]

  Pacific Biosciences binary alignment/map (BAM) library

• dep: libpbcopper1.3.0 (>= 1.4.0+dfsg) [m68k, sh4]

  data structures, algorithms, and utilities for C++ applications

• dep: libpbcopper2.3.0 (>= 2.3.0+dfsg) [ej m68k, sh4]

  data structures, algorithms, and utilities for C++ applications

• dep: libstdc++6 (>= 13.1) [ej m68k, sh4]

  GNU standardbibliotek v3 för C++

  dep: libstdc++6 (>= 5.2) [m68k, sh4]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• rec: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

Hämta pbbamtools

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	2.4.0+dfsg-1+b3	120,9 kbyte	686,0 kbyte	[filförteckning]
amd64	2.4.0+dfsg-1+b3	129,6 kbyte	475,0 kbyte	[filförteckning]
arm64	2.4.0+dfsg-1+b3	115,8 kbyte	619,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	2.4.0+dfsg-1+b3	145,0 kbyte	712,0 kbyte	[filförteckning]
m68k (inofficiell anpassning)	1.3.0+dfsg-2	79,1 kbyte	274,0 kbyte	[filförteckning]
mips64el	2.4.0+dfsg-1+b3	120,5 kbyte	703,0 kbyte	[filförteckning]
ppc64el	2.4.0+dfsg-1+b3	126,8 kbyte	683,0 kbyte	[filförteckning]
riscv64	2.4.0+dfsg-1+b3	122,4 kbyte	363,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	1.3.0+dfsg-2	88,0 kbyte	256,0 kbyte	[filförteckning]