Paket: bio-eagle (2.4.1-3 och andra)

[ Källkod: bio-eagle  ]

Haplotype phasing within a genotyped cohort or using a phased reference panel

Eagle estimates haplotype phase either within a genotyped cohort or using a phased reference panel. The basic idea of the Eagle1 algorithm is to harness identity-by-descent among distant relatives—which is pervasive at very large sample sizes but rare among smaller numbers of samples—to rapidly call phase using a fast scoring approach. In contrast, the Eagle2 algorithm analyzes a full probabilistic model similar to the diploid Li-Stephens model used by previous HMM-based methods.

Please note: The executable was renamed to bio-eagle because of a name clash. Please read more about this in /usr/share/doc/bio-eagle/README.Debian.

Märken: Field: Biologi, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Purpose: Analysing

Andra paket besläktade med bio-eagle

• dep: libboost-iostreams1.83.0 (>= 1.83.0)

  Boost.Iostreams Library

• dep: libboost-program-options1.83.0 (>= 1.83.0)

  program options library for C++

• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libopenblas0

  Optimized BLAS (linear algebra) library (meta)

• dep: libstdc++6 (>= 13.1)

  GNU standardbibliotek v3 för C++

• rec: med-config (>= 2.1)

  Debian Med general config package

• sug: bio-eagle-examples

  Examples for bio-eagle

Hämta bio-eagle

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	2.4.1-3+b3	227,5 kbyte	654,0 kbyte	[filförteckning]
i386	2.4.1-3+b3	253,1 kbyte	697,0 kbyte	[filförteckning]