Paket: toppred (1.10-7)

[ Källkod: toppred  ]

transmembrane topology prediction

Toppred is a program to determine the topology of a transmembrane protein based on G. von Heijne algorithm.

Each sequence from seq data in fasta format is processed, and toppred generate the Hydrophobycity profile of the sequence, and the corresponding hydrophobycities values in the file sequence-ID.hydro.

Furthermore, the predicted topologies are represented as png images. Each topology is stored in file sequence-ID-number.png

The hydrophobicity profile is computed using a window formed by a core rectangular window of size n, flanked by 2 triangular windows of size q. NB rectangular and triangular mean that the ponderation values inside those windows are respectively constant and variable.

This program is a new implementation of the original toppred program, based on G. von Heijne algorithm

Andra paket besläktade med toppred

• dep: libc6 (>= 2.17) [arm64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.4) [ej arm64]

• dep: libgd3 (>= 2.1.0~alpha~)

  GD Graphics Library

• dep: libpng16-16 (>= 1.6.2-1)

  PNG library - runtime (version 1.6)

• dep: zlib1g (>= 1:1.1.4)

  Kompressionsbibliotek - körtidspaket

Hämta toppred

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	60,9 kbyte	151,0 kbyte	[filförteckning]
arm64	59,5 kbyte	147,0 kbyte	[filförteckning]
armhf	58,0 kbyte	135,0 kbyte	[filförteckning]
i386	62,0 kbyte	151,0 kbyte	[filförteckning]