Paket: tophat (2.1.1+dfsg1-2 och andra)

[ Källkod: tophat  ]

fast splice junction mapper for RNA-Seq reads

TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.

Andra paket besläktade med tophat

• dep: bowtie2

  ultrafast memory-efficient short read aligner

  eller bowtie

  Ultrafast memory-efficient short read aligner

• dep: libboost-system1.67.0

  Operating system (e.g. diagnostics support) library

• dep: libboost-thread1.67.0

  portable C++ multi-threading

• dep: libc6 (>= 2.15) [amd64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

• dep: libgcc1 (>= 1:3.0)

  GCC stödbibliotek

• dep: libstdc++6 (>= 5.2)

  GNU standardbibliotek v3 för C++

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: samtools (>= 1.5)

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.3.3)

  Kompressionsbibliotek - körtidspaket

• sug: cufflinks

  Transcript assembly, differential expression and regulation for RNA-Seq

Hämta tophat

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	2.1.1+dfsg1-2+b1	654,2 kbyte	3.832,0 kbyte	[filförteckning]
arm64	2.1.1+dfsg1-2+b1	591,7 kbyte	3.567,0 kbyte	[filförteckning]