Paket: libfreecontact-dev (1.0.21-7 och andra)

[ Källkod: freecontact  ]

fast protein contact predictor library - development files

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains files necessary for developing applications with libfreecontact.

Märken: Software Development: Bibliotek, Role: Development Library

Paket som tillhandahåller libfreecontact-dev

libfreecontact-dev

fast protein contact predictor library - development files

Hämta libfreecontact-dev

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	1.0.21-7+b1	82,4 kbyte	375,0 kbyte	[filförteckning]
arm64	1.0.21-7+b1	77,7 kbyte	361,0 kbyte	[filförteckning]
armhf	1.0.21-7+b1	71,3 kbyte	299,0 kbyte	[filförteckning]
i386	1.0.21-7+b1	72,0 kbyte	294,0 kbyte	[filförteckning]