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[ Källkod: concavity  ]

Paket: concavity (0.1+dfsg.1-4)

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Liknande paket:

predictor of protein ligand binding sites from structure and conservation

ConCavity predicts protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.

ConCavity takes as input a PDB format protein structure and optionally files that characterize the evolutionary sequence conservation of the chains in the structure file.

The following result files are produced by default:

 * Residue ligand binding predictions for each chain (*.scores).
 * Residue ligand binding predictions in a PDB format file (residue
   scores placed in the temp. factor field, *_residue.pdb).
 * Pocket prediction locations in a DX format file (*.dx).
 * PyMOL script to visualize the predictions (*.pml).

Andra paket besläktade med concavity

  • beror
  • rekommenderar
  • föreslår
  • enhances

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i386 302,6 kbyte629,0 kbyte [filförteckning]