Paket: yaha (0.1.83-2)

[ Källkod: yaha  ]

find split-read mappings on single-end queries

yaha is an open source, flexible, sensitive and accurate DNA aligner designed for single-end reads. It supports three major modes of operation:

 * The default “Optimal Query Coverage” (-OQC) mode reports the
   best set of alignments that cover the length of each query.
 * Using “Filter By Similarity” (-FBS), along with the best set of
   alignments, yaha will also output alignments that are highly similar
   to an alignment in the best set.
 * Finally, yaha can output all the alignments found for each query.

The -OQC and -FBS modes are specifically tuned to form split read mappings that can be used to accurately identify structural variation events (deletions, duplications, insertions or inversions) between the subject query and the reference genome.

Andra paket besläktade med yaha

• dep: libc6 (>= 2.17) [arm64, ppc64el]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.4) [ej arm64, ppc64el]

• dep: libgcc-s1 (>= 3.5) [armel, armhf]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 4.2) [mipsel]

Hämta yaha

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	42,6 kbyte	109,0 kbyte	[filförteckning]
arm64	39,4 kbyte	101,0 kbyte	[filförteckning]
armel	35,8 kbyte	92,0 kbyte	[filförteckning]
armhf	35,8 kbyte	72,0 kbyte	[filförteckning]
i386	45,9 kbyte	116,0 kbyte	[filförteckning]
mips64el	46,1 kbyte	129,0 kbyte	[filförteckning]
mipsel	45,0 kbyte	123,0 kbyte	[filförteckning]
ppc64el	48,4 kbyte	145,0 kbyte	[filförteckning]
s390x	41,2 kbyte	113,0 kbyte	[filförteckning]