[ Källkod: python-seqcluster ]
Paket: python3-seqcluster (1.2.7+ds-1) [contrib]
Länkar för python3-seqcluster
Debianresurser:
Hämta källkodspaketet python-seqcluster:
- [python-seqcluster_1.2.7+ds-1.dsc]
- [python-seqcluster_1.2.7+ds.orig.tar.xz]
- [python-seqcluster_1.2.7+ds-1.debian.tar.xz]
Ansvariga:
Externa resurser:
- Hemsida [github.com]
Liknande paket:
analysis of small RNA in NGS data
Identifies small RNA sequences of all sorts in RNA sequencing data. This is especially helpful for the identification of RNA that is neither coding nor belonging to the already well-established group of miRNA, towards many tools feel constrained to.
This package provides the Python module. For executables see the package 'seqcluster'.
Andra paket besläktade med python3-seqcluster
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-colorlog
- formatter to use with the logging module of Python 3
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- dep: python3-mirtop
- annotate miRNAs with a standard mirna/isomir naming (Python 3)
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- dep: python3-nose (>= 1.3.0)
- test discovery and running for Python3 unittest
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: python3-pandas
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- dep: python3-progressbar (>= 2.3.0)
- text progress bar library for Python (Python 3)
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- dep: python3-pybedtools
- Python 3 wrapper around BEDTools for bioinformatics work
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-recommonmark
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- dep: python3-scipy (>= 0.15.1)
- scientific tools for Python 3
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- dep: python3-yaml
- YAML parser and emitter for Python3
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- rec: bedtools
- suite of utilities for comparing genomic features
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- rec: fastqc
- quality control for high throughput sequence data
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- rec: libjs-bootstrap
- HTML, CSS and JS framework
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- rec: libjs-jquery
- JavaScript library for dynamic web applications
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- rec: libjs-jquery-datatables
- jQuery plug-in that makes nice tables from different data sources
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- rec: libjs-jquery-tablesorter
- jQuery flexible client-side table sorting plugin
-
- rec: libjs-jquery-ui
- JavaScript UI library for dynamic web applications
-
- rec: mirtop
- annotate miRNAs with a standard mirna/isomir naming
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- rec: python3-cutadapt
- Clean biological sequences from high-throughput sequencing reads (Python 3)
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- rec: python3-dateutils
- Paketet inte tillgängligt
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- rec: python3-tz
- Python3 version of the Olson timezone database
-
- rec: r-bioc-degreport
- BioConductor report of DEG analysis
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- rec: r-bioc-deseq2
- R package for RNA-Seq Differential Expression Analysis
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- rec: r-bioc-edger
- Empirical analysis of digital gene expression data in R
-
- rec: r-bioc-htsfilter
- GNU R filter replicated high-throughput transcriptome sequencing data
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- rec: r-cran-devtools
- Tools to Make Developing R Packages Easier
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- rec: r-cran-dplyr
- GNU R grammar of data manipulation
-
- rec: r-cran-ggplot2
- implementation of the Grammar of Graphics
-
- rec: r-cran-gplots
- GNU R package with tools for plotting data by Greg Warnes et al
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- rec: r-cran-gridextra
- GNU R package with extensions for the grid package
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- rec: r-cran-gtools
- GNU R package with R programming tools by Greg Warnes et al
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- rec: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- rec: r-cran-pheatmap
- GNU R package to create pretty heatmaps
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- rec: r-cran-reshape
- Flexibly reshape data
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- rec: rna-star
- ultrafast universal RNA-seq aligner
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- rec: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: vienna-rna
- RNA sequence analysis
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- sug: seqcluster
- analysis of small RNA in NGS data
Hämta python3-seqcluster
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| all | 1.624,0 kbyte | 108.063,0 kbyte | [filförteckning] |