Paket: glam2 (1064-9)

[ Källkod: glam2  ]

gapped protein motifs from unaligned sequences

GLAM2 is a software package for finding motifs in sequences, typically amino-acid or nucleotide sequences. A motif is a re-occurring sequence pattern: typical examples are the TATA box and the CAAX prenylation motif. The main innovation of GLAM2 is that it allows insertions and deletions in motifs.

This package includes programs for discovering motifs shared by a set of sequences and finding matches to these motifs in a sequence database, as well as utilities for converting glam2 motifs to standard alignment formats, masking glam2 motifs out of sequences so that weaker motifs can be found, and removing highly similar members of a set of sequences.

The package includes these programs:

 glam2:       discovering motifs shared by a set of sequences;
 glam2scan:   finding matches, in a sequence database, to a motif discovered
              by glam2;
 glam2format: converting glam2 motifs to  standard alignment formats;
 glam2mask:   masking glam2 motifs out of sequences, so that weaker motifs
              can be found;
 glam2-purge: removing highly similar members of a set of sequences.

In this binary package, the fast Fourier algorithm (FFT) was enabled for the glam2 program.

Märken: Field: Biologi, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Searching, Supports Format: works-with-format::TODO, works-with-format::plaintext, Works with: Behöver ett märke till

Andra paket besläktade med glam2

• dep: libc6 (>= 2.29)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libfftw3-double3 (>= 3.3.5)

  Library for computing Fast Fourier Transforms - Double precision

Hämta glam2

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	230,0 kbyte	507,0 kbyte	[filförteckning]
arm64	222,7 kbyte	491,0 kbyte	[filförteckning]
armel	216,8 kbyte	474,0 kbyte	[filförteckning]
armhf	214,4 kbyte	402,0 kbyte	[filförteckning]
i386	233,3 kbyte	518,0 kbyte	[filförteckning]
mips64el	227,4 kbyte	543,0 kbyte	[filförteckning]
mipsel	226,3 kbyte	513,0 kbyte	[filförteckning]
ppc64el	242,6 kbyte	763,0 kbyte	[filförteckning]
s390x	226,3 kbyte	515,0 kbyte	[filförteckning]