Paket: python3-pauvre (0.2.2-2)

[ Källkod: python-pauvre  ]

QC and genome browser plotting Oxford Nanopore and PacBio long reads

Pauvre is a plotting package designed for nanopore and PacBio long reads.

This package currently hosts four scripts for plotting and/or printing stats.

 pauvre marginplot
    Takes a fastq file as input and outputs a marginal histogram with a
    heatmap.
 pauvre stats
    Takes a fastq file as input and prints out a table of stats, including
    how many basepairs/reads there are for a length/mean quality cutoff.
    This is also automagically called when using pauvre marginplot
 pauvre redwood
    Method of representing circular genomes. A redwood plot contains long
    reads as "rings" on the inside, a gene annotation "cambrium/phloem",
    and a RNAseq "bark". The input is .bam files for the long reads and
    RNAseq data, and a .gff file for the annotation.
 pauvre synteny
    Makes a synteny plot of circular genomes. Finds the most parsimonius
    rotation to display the synteny of all the input genomes with the
    fewest crossings-over. Input is one .gff file per circular genome
    and one directory of gene alignments.

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