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[ Källkod: biobambam2  ]

Paket: biobambam2 (2.0.179+ds-1)

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tools for early stage alignment file processing

This package contains some tools for processing BAM files, including

  bamsormadup:  parallel sorting and duplicate marking
  bamcollate2:  reads BAM and writes BAM reordered such that alignment
                or collated by query name
  bammarkduplicates: reads BAM and writes BAM with duplicate alignments
                marked using the BAM flags field
  bammaskflags: reads BAM and writes BAM while masking (removing) bits
                from the flags column
  bamrecompress: reads BAM and writes BAM with a defined compression
                 setting. This tool is capable of multi-threading.
  bamsort:       reads BAM and writes BAM resorted by coordinates or
                 query name
  bamtofastq:    reads BAM and writes FastQ; output can be collated
                 or uncollated by query name

Andra paket besläktade med biobambam2

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  • föreslår
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Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
amd64 9.201,5 kbyte65.075,0 kbyte [filförteckning]
arm64 8.442,3 kbyte61.559,0 kbyte [filförteckning]
i386 9.888,3 kbyte73.243,0 kbyte [filförteckning]
ppc64el 9.076,5 kbyte79.263,0 kbyte [filförteckning]