Paket: proteinortho (6.0.28+dfsg-1)

[ Källkod: proteinortho  ]

Detection of (Co-)orthologs in large-scale protein analysis

Proteinortho is a stand-alone tool that is geared towards large datasets and makes use of distributed computing techniques when run on multi-core hardware. It implements an extended version of the reciprocal best alignment heuristic. Proteinortho was applied to compute orthologous proteins in the complete set of all 717 eubacterial genomes available at NCBI at the beginning of 2009. Authors succeeded identifying thirty proteins present in 99% of all bacterial proteomes.

Andra paket besläktade med proteinortho

• dep: diamond-aligner

  accelerated BLAST compatible local sequence aligner

• dep: libc6 (>= 2.17)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC stödbibliotek

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

• dep: libstdc++6 (>= 5.2)

  GNU standardbibliotek v3 för C++

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: procps

  Verktyg för filsystemet /proc

• dep: python3

  interactive high-level object-oriented language (default python3 version)

Hämta proteinortho

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
arm64	197,5 kbyte	754,0 kbyte	[filförteckning]