Paket: pizzly (0.37.3+ds-5)

[ Källkod: pizzly  ]

Identifies gene fusions in RNA sequencing data

For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.

Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.

Andra paket besläktade med pizzly

• dep: kallisto

  near-optimal RNA-Seq quantification

• dep: libc6 (>= 2.29)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC stödbibliotek

• dep: libstdc++6 (>= 9)

  GNU standardbibliotek v3 för C++

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4)

  Kompressionsbibliotek - körtidspaket

• rec: python3-h5py

  general-purpose Python interface to hdf5

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Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
arm64	251,7 kbyte	808,0 kbyte	[filförteckning]