Paket: mapdamage (2.2.1+dfsg-1)

[ Källkod: mapdamage  ]

tracking and quantifying damage patterns in ancient DNA sequences

MapDamage is a computational framework written in Python and R, which tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.

MapDamage is developed at the Centre for GeoGenetics by the Orlando Group.

Andra paket besläktade med mapdamage

• dep: libopenblas-dev

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  eller libblas-dev

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  eller libatlas-base-dev

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• dep: libopenblas-dev

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  eller liblapack-dev

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  eller libatlas-base-dev

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  eller liblapack.so

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• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-gam

  Generalized Additive Models for R

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-inline

  GNU R package to inline C, C++, Fortran functions from R

• dep: r-cran-rcpp

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcppgsl

  GNU R package for integration with the GNU GSL

• dep: seqtk

  Fast and lightweight tool for processing sequences in the FASTA or FASTQ format

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Arkitektur	Paketstorlek	Installerad storlek	Filer
all	41,5 kbyte	191,0 kbyte	[filförteckning]