Paket: changeo (1.0.2-1)

[ Källkod: changeo  ]

Repertoire clonal assignment toolkit (Python 3)

Change-O is a collection of tools for processing the output of V(D)J alignment tools, assigning clonal clusters to immunoglobulin (Ig) sequences, and reconstructing germline sequences.

Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of Ig repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. Change-O is a suite of utilities to facilitate advanced analysis of Ig and TCR sequences following germline segment assignment. Change-O handles output from IMGT/HighV-QUEST and IgBLAST, and provides a wide variety of clustering methods for assigning clonal groups to Ig sequences. Record sorting, grouping, and various database manipulation operations are also included.

This package installs the library for Python 3.

Andra paket besläktade med changeo

• dep: python3

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• dep: python3-airr

  Data Representation Standard library for antibody and TCR sequences

• dep: python3-biopython

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• dep: python3-numpy

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• dep: python3-pandas

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• dep: python3-pkg-resources

  Package Discovery and Resource Access using pkg_resources

• dep: python3-presto

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• dep: python3-scipy

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• dep: python3-yaml

  YAML parser and emitter for Python3

• rec: python3-biopython (>= 1.65)

  Python3 library for bioinformatics

• rec: python3-pandas (>= 0.15)

  data structures for "relational" or "labeled" data

• rec: python3-presto (>= 0.6.2)

  toolkit for processing B and T cell sequences (Python3 module)

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