Paket: python3-dna-jellyfish (2.3.0-15 och andra)

[ Källkod: jellyfish  ]

count k-mers in DNA sequences (Python bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Python bindings of jellyfish.

Andra paket besläktade med python3-dna-jellyfish

• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.0) [ej armel, armhf, i386]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libjellyfish-2.0-2 (>= 2.3.0)

  count k-mers in DNA sequences (dynamic library of jellyfish)

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU standardbibliotek v3 för C++

  dep: libstdc++6 (>= 9) [ej armel, armhf]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12)

  dep: python3 (>= 3.11~)

Hämta python3-dna-jellyfish

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	2.3.0-15+b3	52,1 kbyte	175,0 kbyte	[filförteckning]
arm64	2.3.0-15+b3	49,6 kbyte	171,0 kbyte	[filförteckning]
armel	2.3.0-15+b3	51,9 kbyte	168,0 kbyte	[filförteckning]
armhf	2.3.0-15+b3	52,8 kbyte	140,0 kbyte	[filförteckning]
i386	2.3.0-15+b3	60,5 kbyte	184,0 kbyte	[filförteckning]
mips64el	2.3.0-15+b3	50,5 kbyte	242,0 kbyte	[filförteckning]
ppc64el	2.3.0-15+b3	55,1 kbyte	235,0 kbyte	[filförteckning]