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[ Source: trinityrnaseq  ]

Package: trinityrnaseq (2.2.0+dfsg-2 and others)

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RNA-Seq De novo Assembly

Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes.

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Architecture Version Package Size Installed Size Files
amd64 2.2.0+dfsg-2+b1 1,707.2 kB8,663.0 kB [list of files]