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Package: libhts1 (1.3.2-2)

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C library for high-throughput sequencing data formats

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

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Architecture Package Size Installed Size Files
amd64 250.5 kB649.0 kB [list of files]
arm64 209.4 kB560.0 kB [list of files]
armel 213.1 kB588.0 kB [list of files]
i386 267.7 kB708.0 kB [list of files]
mips64el 230.2 kB725.0 kB [list of files]
mipsel 232.7 kB695.0 kB [list of files]
ppc64el 230.3 kB748.0 kB [list of files]