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[ Source: clustalx  ]

Package: clustalx (2.1+lgpl-5)

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Multiple alignment of nucleic acid and protein sequences (graphical interface)

This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade.

The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment.

An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted.

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: C, User Interface: interface::graphical, interface::x11, Role: Program, Scope: Utility, Interface Toolkit: uitoolkit::motif, use::analysing, Purpose: Comparing, use::viewing, works-with-format::plaintext, Works with: Need an extra tag, X Window System: Application

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Architecture Package Size Installed Size Files
amd64 444.5 kB1,378.0 kB [list of files]
arm64 390.4 kB1,297.0 kB [list of files]
armel 379.9 kB1,209.0 kB [list of files]
armhf 387.8 kB909.0 kB [list of files]
i386 458.8 kB1,401.0 kB [list of files]
mips 399.1 kB1,664.0 kB [list of files]
mips64el 407.3 kB1,724.0 kB [list of files]
mipsel 407.0 kB1,672.0 kB [list of files]
ppc64el 418.7 kB1,593.0 kB [list of files]
s390x 423.2 kB1,541.0 kB [list of files]