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[ Source: tree-puzzle  ]

Package: tree-puzzle (5.3~rc16+dfsg-8)

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Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

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Architecture Package Size Installed Size Files
amd64 167.7 kB404.0 kB [list of files]
arm64 155.9 kB384.0 kB [list of files]
armel 160.8 kB412.0 kB [list of files]
armhf 151.9 kB304.0 kB [list of files]
i386 179.4 kB488.0 kB [list of files]
mips64el 167.4 kB468.0 kB [list of files]
mipsel 167.1 kB449.0 kB [list of files]
ppc64el 176.3 kB493.0 kB [list of files]
s390x 154.3 kB412.0 kB [list of files]