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[ Source: tree-puzzle  ]

Package: tree-ppuzzle (5.3~rc16+dfsg-8)

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Parallelized reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the parallelized version of tree-puzzle.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

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Architecture Package Size Installed Size Files
amd64 183.0 kB436.0 kB [list of files]
arm64 170.9 kB412.0 kB [list of files]
armel 174.7 kB444.0 kB [list of files]
armhf 166.0 kB328.0 kB [list of files]
i386 195.2 kB532.0 kB [list of files]
mips64el 182.8 kB515.0 kB [list of files]
mipsel 182.7 kB495.0 kB [list of files]
ppc64el 192.8 kB557.0 kB [list of files]
s390x 169.6 kB452.0 kB [list of files]