Package: phybin (0.3-6)

[ Source: phybin  ]

binning/clustering newick trees by topology

PhyBin is a simple command line tool that classifies a set of Newick tree files by their topology. The purpose of it is to take a large set of tree files and browse through the most common tree topologies.

It can do simple binning of identical trees or more complex clustering based on an all-to-all Robinson-Foulds distance matrix.

phybin produces output files that characterize the size and contents of each bin or cluster (including generating GraphViz-based visual representations of the tree topologies).

Other Packages Related to phybin

• dep: libatomic1 (>= 4.8) [armel, mipsel]

  support library providing __atomic built-in functions

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libffi8 (>= 3.4)

  Foreign Function Interface library runtime

• dep: libgmp10 (>= 2:6.2.1+dfsg1)

  Multiprecision arithmetic library

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Architecture	Package Size	Installed Size	Files
amd64	1,614.5 kB	11,976.0 kB	[list of files]
arm64	4,125.4 kB	30,322.0 kB	[list of files]
armel	4,407.2 kB	28,552.0 kB	[list of files]
armhf	4,444.7 kB	28,524.0 kB	[list of files]
i386	4,957.4 kB	37,630.0 kB	[list of files]
mips64el	5,284.0 kB	58,772.0 kB	[list of files]
mipsel	3,528.3 kB	40,639.0 kB	[list of files]
ppc64el	3,498.6 kB	38,137.0 kB	[list of files]
s390x	7,543.2 kB	53,627.0 kB	[list of files]