Package: minimap2 (2.24+dfsg-3 and others)

[ Source: minimap2  ]

versatile pairwise aligner for genomic and spliced nucleotide sequences

Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.

For ~10kb noisy reads sequences, minimap2 is tens of times faster than mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more accurate on simulated long reads and produces biologically meaningful alignment ready for downstream analyses. For >100bp Illumina short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data. Detailed evaluations are available from the minimap2 paper or the preprint.

Other Packages Related to minimap2

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

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Architecture	Version	Package Size	Installed Size	Files
amd64	2.24+dfsg-3+b1	377.2 kB	498.0 kB	[list of files]
arm64	2.24+dfsg-3+b1	369.0 kB	510.0 kB	[list of files]
armel	2.24+dfsg-3+b1	386.7 kB	545.0 kB	[list of files]
armhf	2.24+dfsg-3+b1	388.1 kB	477.0 kB	[list of files]
i386	2.24+dfsg-3+b1	384.2 kB	525.0 kB	[list of files]
mips64el	2.24+dfsg-3+b1	402.3 kB	582.0 kB	[list of files]
mipsel	2.24+dfsg-3+b1	412.6 kB	645.0 kB	[list of files]
ppc64el	2.24+dfsg-3+b1	389.0 kB	574.0 kB	[list of files]
s390x	2.24+dfsg-3+b1	389.4 kB	567.0 kB	[list of files]